Gene : Carub.0001s2244 C. rubella v1.1
Defline:  (1 of 1) 2.7.4.7 - Phosphomethylpyrimidine kinase / Hydroxymethylpyrimidine phosphokinase Genomic Order:  2244
Name:  ? Carub.0001s2244 Secondary Identifier:  ? PAC:39230047
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-6890 Capsella rubella pathologic  
Crubella PWY-6908 Capsella rubella pathologic  
Crubella PWY-6910 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s2244 0.5kb upstream 0.5kb upstream 3184 true scaffold_1: 8104837-8108020 Capsella rubella
Carub.0001s2244 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 8104837-8105336 Capsella rubella
Carub.0001s2244 0.5kb downstream 0.5kb downstream 3184 true scaffold_1: 8105337-8108520 Capsella rubella
Carub.0001s2244 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 8108021-8108520 Capsella rubella
Carub.0001s2244 1.0kb upstream 1.0kb upstream 3684 true scaffold_1: 8104337-8108020 Capsella rubella
Carub.0001s2244 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 8104337-8105336 Capsella rubella
Carub.0001s2244 1.0kb downstream 1.0kb downstream 3684 true scaffold_1: 8105337-8109020 Capsella rubella
Carub.0001s2244 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 8108021-8109020 Capsella rubella
Carub.0001s2244 2.0kb upstream 2.0kb upstream 4684 true scaffold_1: 8103337-8108020 Capsella rubella
Carub.0001s2244 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 8103337-8105336 Capsella rubella
Carub.0001s2244 2.0kb downstream 2.0kb downstream 4684 true scaffold_1: 8105337-8110020 Capsella rubella
Carub.0001s2244 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 8108021-8110020 Capsella rubella
Carub.0001s2244 5.0kb upstream 5.0kb upstream 7684 true scaffold_1: 8100337-8108020 Capsella rubella
Carub.0001s2244 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 8100337-8105336 Capsella rubella
Carub.0001s2244 5.0kb downstream 5.0kb downstream 7684 true scaffold_1: 8105337-8113020 Capsella rubella
Carub.0001s2244 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 8108021-8113020 Capsella rubella
Carub.0001s2244 10.0kb upstream 10.0kb upstream 12684 true scaffold_1: 8095337-8108020 Capsella rubella
Carub.0001s2244 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 8095337-8105336 Capsella rubella
Carub.0001s2244 10.0kb downstream 10.0kb downstream 12684 true scaffold_1: 8105337-8118020 Capsella rubella
Carub.0001s2244 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 8108021-8118020 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361033 5261 Brassicaceae View MSA
123829578 5264 Brassicales-Malvales View MSA
124340765 5266 SBM View MSA
124237684 5268 Malvidae View MSA
124063802 5270 Rosid View MSA
123739977 5271 Pentapetalae View MSA
122792526 5272 Eudicot View MSA
122045389 5273 Angiosperm View MSA
121344045 5274 Embryophyte View MSA
123424693 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain