Protein Family : U2 snRNP auxilliary factor, large subunit, splicing factor 124250536

Method ID:  5268 Method Name:  Malvidae
Sequence Alignment:  View MSA Member Count:  37

37 Genes

Primary Identifier Defline Organism Name Symbol Length Chromosome Location
29646.t000023 (1 of 1) PTHR23139//PTHR23139:SF61 - RNA-BINDING PROTEIN // SUBFAMILY NOT NAMED R. communis v0.1 6077   29646: 166962-173038
orange1.1g009052m.g (1 of 1) PTHR23139//PTHR23139:SF62 - RNA-BINDING PROTEIN C. sinensis v1.1 4682   scaffold00006: 2587106-2591787
orange1.1g009944m.g (1 of 1) PTHR23139//PTHR23139:SF61 - RNA-BINDING PROTEIN C. sinensis v1.1 9360   scaffold00010: 2034068-2043427
AT4G36690 (1 of 1) PTHR23139//PTHR23139:SF61//PTHR23139:SF62 - RNA-BINDING PROTEIN // SUBFAMILY NOT NAMED // SUBFAMILY NOT NAMED A. thaliana TAIR10 ATU2AF65A 3815   Chr4: 17293947-17297761
AT1G60900 (1 of 2) PTHR23139//PTHR23139:SF62 - RNA-BINDING PROTEIN // SUBFAMILY NOT NAMED A. thaliana TAIR10 4114   Chr1: 22423909-22428022
Thhalv10024786m.g (1 of 2) PTHR23139//PTHR23139:SF61 - RNA-BINDING PROTEIN E. salsugineum v1.0 3645   scaffold_1: 1426711-1430355
Thhalv10023361m.g (1 of 1) PTHR23139//PTHR23139:SF62 - RNA-BINDING PROTEIN E. salsugineum v1.0 4265   scaffold_8: 3611227-3615491
Ciclev10025221m.g (1 of 1) PTHR23139//PTHR23139:SF62 - RNA-BINDING PROTEIN C. clementina v1.0 5189   scaffold_7: 2220639-2225827
Ciclev10014912m.g (1 of 1) PTHR23139//PTHR23139:SF61 - RNA-BINDING PROTEIN C. clementina v1.0 9679   scaffold_2: 33276750-33286428
Lus10041725.g (1 of 2) PTHR23139//PTHR23139:SF61 - RNA-BINDING PROTEIN L. usitatissimum v1.0 3819   scaffold272: 1485613-1489431
Lus10024026.g (1 of 2) PTHR23139//PTHR23139:SF61 - RNA-BINDING PROTEIN L. usitatissimum v1.0 3831   scaffold353: 96327-100157
Gorai.012G005600 (1 of 2) PTHR23139//PTHR23139:SF62 - RNA-BINDING PROTEIN G. raimondii v2.1 4875   Chr12: 668982-673856
Gorai.008G068800 (1 of 2) PTHR23139//PTHR23139:SF62 - RNA-BINDING PROTEIN G. raimondii v2.1 4525   Chr08: 11330717-11335241
Gorai.009G311200 (1 of 1) PTHR23139//PTHR23139:SF61 - RNA-BINDING PROTEIN G. raimondii v2.1 5234   Chr09: 28942848-28948081
Thecc1EG000427 (1 of 1) PTHR23139//PTHR23139:SF62 - RNA-BINDING PROTEIN // SUBFAMILY NOT NAMED T. cacao v1.1 4980   scaffold_1: 1740504-1745483
Thecc1EG043260 (1 of 1) PTHR23139//PTHR23139:SF61//PTHR23139:SF62 - RNA-BINDING PROTEIN // SUBFAMILY NOT NAMED // SUBFAMILY NOT NAMED T. cacao v1.1 4963   scaffold_10r: 4830382-4835344
Araha.11209s0004 (1 of 2) PTHR23139//PTHR23139:SF62 - RNA-BINDING PROTEIN A. halleri v1.1 4100   Scaffold11209: 22860-26959
Araha.18319s0001 (1 of 2) PTHR23139//PTHR23139:SF62 - RNA-BINDING PROTEIN A. halleri v1.1 3669   Scaffold18319: 14-3682
Cagra.1216s0006 (1 of 1) PTHR23139//PTHR23139:SF61 - RNA-BINDING PROTEIN C. grandiflora v1.1 4501   Scaffold1216: 26573-31073
Cagra.1695s0032 (1 of 1) PTHR23139//PTHR23139:SF62 - RNA-BINDING PROTEIN C. grandiflora v1.1 3608   Scaffold1695: 128436-132043
Brara.A02501 (1 of 1) PF06495 - Fruit fly transformer protein (Transformer) B. rapa FPsc v1.3 3695   A01: 20322704-20326398
Brara.H01687 (1 of 4) PTHR23139//PTHR23139:SF62 - RNA-BINDING PROTEIN B. rapa FPsc v1.3 3287   A08: 16508335-16511621
Bostr.7867s1525 (1 of 1) PTHR23139//PTHR23139:SF61 - RNA-BINDING PROTEIN B. stricta v1.2 3896   Scaffold7867: 7699561-7703456
Bostr.10040s0121 (1 of 1) PTHR23139//PTHR23139:SF62 - RNA-BINDING PROTEIN B. stricta v1.2 4302   Scaffold10040: 1071965-1076266
SapurV1A.0817s0040 (1 of 2) PTHR23139//PTHR23139:SF62 - RNA-BINDING PROTEIN // SUBFAMILY NOT NAMED S. purpurea v1.0 4598   chr05: 8691485-8696082
SapurV1A.0255s0140 (1 of 2) PTHR23139//PTHR23139:SF62 - RNA-BINDING PROTEIN // SUBFAMILY NOT NAMED S. purpurea v1.0 4677   chr07: 2140379-2145055
SapurV1A.0012s0110 (1 of 1) KOG0120//KOG0124 - Splicing factor U2AF, large subunit (RRM superfamily) // Polypyrimidine tract-binding protein PUF60 (RRM superfamily) S. purpurea v1.0 8307   chr04: 2339124-2347430
Manes.13G137500 (1 of 1) PTHR23139//PTHR23139:SF61 - RNA-BINDING PROTEIN M. esculenta v6.1 4882   Chromosome13: 26525368-26530249
AL2G15600 (1 of 2) PTHR23139//PTHR23139:SF62 - RNA-BINDING PROTEIN // SUBFAMILY NOT NAMED A. lyrata v2.1 4142   scaffold_2: 2847799-2851940
AL7G14320 (1 of 3) K12837 - splicing factor U2AF 65 kDa subunit (U2AF2) A. lyrata v2.1 3754   scaffold_7: 1725010-1728763

37 Members

Protein Name Organism Name Cluster ID Cluster Name Same Organism Count Method ID Method Name
29646.m001075 R. communis v0.1 124250536 U2 snRNP auxilliary factor, large subunit, splicing factor 1 5268 Malvidae
AT4G36690.1 A. thaliana TAIR10 124250536 U2 snRNP auxilliary factor, large subunit, splicing factor 2 5268 Malvidae
Ciclev10025221m C. clementina v1.0 124250536 U2 snRNP auxilliary factor, large subunit, splicing factor 2 5268 Malvidae
Lus10041725 L. usitatissimum v1.0 124250536 U2 snRNP auxilliary factor, large subunit, splicing factor 2 5268 Malvidae
Gorai.008G068800.1 G. raimondii v2.1 124250536 U2 snRNP auxilliary factor, large subunit, splicing factor 3 5268 Malvidae
Gorai.012G005600.1 G. raimondii v2.1 124250536 U2 snRNP auxilliary factor, large subunit, splicing factor 3 5268 Malvidae
Thecc1EG000427t2 T. cacao v1.1 124250536 U2 snRNP auxilliary factor, large subunit, splicing factor 2 5268 Malvidae
Araha.11209s0004.1.p A. halleri v1.1 124250536 U2 snRNP auxilliary factor, large subunit, splicing factor 2 5268 Malvidae
Cagra.1216s0006.1.p C. grandiflora v1.1 124250536 U2 snRNP auxilliary factor, large subunit, splicing factor 2 5268 Malvidae
Brara.H01687.1.p B. rapa FPsc v1.3 124250536 U2 snRNP auxilliary factor, large subunit, splicing factor 2 5268 Malvidae
Bostr.7867s1525.1.p B. stricta v1.2 124250536 U2 snRNP auxilliary factor, large subunit, splicing factor 2 5268 Malvidae
AL2G15600.t4 A. lyrata v2.1 124250536 U2 snRNP auxilliary factor, large subunit, splicing factor 2 5268 Malvidae
Potri.004G040900.1.p P. trichocarpa v3.1 124250536 U2 snRNP auxilliary factor, large subunit, splicing factor 3 5268 Malvidae
Potri.007G028500.2.p P. trichocarpa v3.1 124250536 U2 snRNP auxilliary factor, large subunit, splicing factor 3 5268 Malvidae
Potri.005G125500.9.p P. trichocarpa v3.1 124250536 U2 snRNP auxilliary factor, large subunit, splicing factor 3 5268 Malvidae
Podel.07G033500.1.p P. deltoides WV94 v2.1 124250536 U2 snRNP auxilliary factor, large subunit, splicing factor 2 5268 Malvidae
orange1.1g009052m C. sinensis v1.1 124250536 U2 snRNP auxilliary factor, large subunit, splicing factor 2 5268 Malvidae
orange1.1g009944m C. sinensis v1.1 124250536 U2 snRNP auxilliary factor, large subunit, splicing factor 2 5268 Malvidae
AT1G60900.1 A. thaliana TAIR10 124250536 U2 snRNP auxilliary factor, large subunit, splicing factor 2 5268 Malvidae
Thhalv10023361m E. salsugineum v1.0 124250536 U2 snRNP auxilliary factor, large subunit, splicing factor 2 5268 Malvidae
Thhalv10024786m E. salsugineum v1.0 124250536 U2 snRNP auxilliary factor, large subunit, splicing factor 2 5268 Malvidae
Ciclev10014912m C. clementina v1.0 124250536 U2 snRNP auxilliary factor, large subunit, splicing factor 2 5268 Malvidae
Lus10024026 L. usitatissimum v1.0 124250536 U2 snRNP auxilliary factor, large subunit, splicing factor 2 5268 Malvidae
Gorai.009G311200.1 G. raimondii v2.1 124250536 U2 snRNP auxilliary factor, large subunit, splicing factor 3 5268 Malvidae
Thecc1EG043260t4 T. cacao v1.1 124250536 U2 snRNP auxilliary factor, large subunit, splicing factor 2 5268 Malvidae
Araha.18319s0001.1.p A. halleri v1.1 124250536 U2 snRNP auxilliary factor, large subunit, splicing factor 2 5268 Malvidae
Cagra.1695s0032.1.p C. grandiflora v1.1 124250536 U2 snRNP auxilliary factor, large subunit, splicing factor 2 5268 Malvidae
Brara.A02501.1.p B. rapa FPsc v1.3 124250536 U2 snRNP auxilliary factor, large subunit, splicing factor 2 5268 Malvidae
Bostr.10040s0121.1.p B. stricta v1.2 124250536 U2 snRNP auxilliary factor, large subunit, splicing factor 2 5268 Malvidae
SapurV1A.0817s0040.1.p S. purpurea v1.0 124250536 U2 snRNP auxilliary factor, large subunit, splicing factor 3 5268 Malvidae