Gene : Lsat_1_v5_gn_4_4781 L. sativa V8
Defline:  (1 of 50) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  143
Name:  ? Lsat_1_v5_gn_4_4781 Secondary Identifier:  ? PAC:38933116
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_4_4781 0.5kb upstream 0.5kb upstream 2054   true Lsat_1_v8_lg_4: 7268096-7270149 Lactuca sativa
Lsat_1_v5_gn_4_4781 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_4: 7269650-7270149 Lactuca sativa
Lsat_1_v5_gn_4_4781 0.5kb downstream 0.5kb downstream 2054   true Lsat_1_v8_lg_4: 7267596-7269649 Lactuca sativa
Lsat_1_v5_gn_4_4781 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_4: 7267596-7268095 Lactuca sativa
Lsat_1_v5_gn_4_4781 1.0kb upstream 1.0kb upstream 2554   true Lsat_1_v8_lg_4: 7268096-7270649 Lactuca sativa
Lsat_1_v5_gn_4_4781 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_4: 7269650-7270649 Lactuca sativa
Lsat_1_v5_gn_4_4781 1.0kb downstream 1.0kb downstream 2554   true Lsat_1_v8_lg_4: 7267096-7269649 Lactuca sativa
Lsat_1_v5_gn_4_4781 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_4: 7267096-7268095 Lactuca sativa
Lsat_1_v5_gn_4_4781 2.0kb upstream 2.0kb upstream 3554   true Lsat_1_v8_lg_4: 7268096-7271649 Lactuca sativa
Lsat_1_v5_gn_4_4781 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_4: 7269650-7271649 Lactuca sativa
Lsat_1_v5_gn_4_4781 2.0kb downstream 2.0kb downstream 3554   true Lsat_1_v8_lg_4: 7266096-7269649 Lactuca sativa
Lsat_1_v5_gn_4_4781 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_4: 7266096-7268095 Lactuca sativa
Lsat_1_v5_gn_4_4781 5.0kb upstream 5.0kb upstream 6554   true Lsat_1_v8_lg_4: 7268096-7274649 Lactuca sativa
Lsat_1_v5_gn_4_4781 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_4: 7269650-7274649 Lactuca sativa
Lsat_1_v5_gn_4_4781 5.0kb downstream 5.0kb downstream 6554   true Lsat_1_v8_lg_4: 7263096-7269649 Lactuca sativa
Lsat_1_v5_gn_4_4781 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_4: 7263096-7268095 Lactuca sativa
Lsat_1_v5_gn_4_4781 10.0kb upstream 10.0kb upstream 11554   true Lsat_1_v8_lg_4: 7268096-7279649 Lactuca sativa
Lsat_1_v5_gn_4_4781 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_4: 7269650-7279649 Lactuca sativa
Lsat_1_v5_gn_4_4781 10.0kb downstream 10.0kb downstream 11554   true Lsat_1_v8_lg_4: 7258096-7269649 Lactuca sativa
Lsat_1_v5_gn_4_4781 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_4: 7258096-7268095 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029261 5273 Angiosperm View MSA
121472245 5263 Asterids View MSA
123742490 5271 Pentapetalae View MSA
122795745 5272 Eudicot View MSA
121298616 5274 Embryophyte View MSA
123336578 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain