Gene : Pavir.J12238 P. virgatum

Defline:  (1 of 9) K00026 - malate dehydrogenase (MDH2) Name:  ? Pavir.J12238
Secondary Identifier:  ? PAC:30219643

Sequence Feature Displayer

Ontology Annotation Displayer

10 Pathways

Pathway Identifier Pathway name Organism Name Analysis Method Analysis Status
Pvirgatum PWY-7115 C4 photosynthetic carbon assimilation cycle, NAD-ME type Panicum virgatum pathologic  
Pvirgatum PWY-7115 C4 photosynthetic carbon assimilation cycle, NAD-ME type Panicum virgatum pathologic  
Pvirgatum PWY-561 superpathway of glyoxylate cycle and fatty acid degradation Panicum virgatum pathologic  
Pvirgatum PWY-561 superpathway of glyoxylate cycle and fatty acid degradation Panicum virgatum pathologic  
Pvirgatum PWY-5464 superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle Panicum virgatum pathologic  
Pvirgatum PWY-5464 superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle Panicum virgatum pathologic  
Pvirgatum GLUCONEO-PWY gluconeogenesis I Panicum virgatum pathologic  
Pvirgatum GLUCONEO-PWY gluconeogenesis I Panicum virgatum pathologic  
Pvirgatum GLYOXYLATE-BYPASS glyoxylate cycle Panicum virgatum pathologic  
Pvirgatum PWY-5690 TCA cycle II (plants and fungi) Panicum virgatum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

4 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pavir.J12238 5.0kb upstream 5.0kb upstream 5614   true contig14545: 5181-10794 Panicum virgatum
Pavir.J12238 5.0kb upstream 5.0kb upstream 1195   false contig14545: 9600-10794 Panicum virgatum
Pavir.J12238 5.0kb downstream 5.0kb downstream 9419   true contig14545: 181-9599 Panicum virgatum
Pavir.J12238 5.0kb downstream 5.0kb downstream 5000   false contig14545: 181-5180 Panicum virgatum

278 Homologs


Gene . Primary Identifier

Ortholog _ Organism . Short Name

Ortholog _ Gene . Primary Identifier
Pavir.J12238 P. virgatum GSVIVG01014231001
Pavir.J12238 V. vinifera Pavir.J08443
Pavir.J12238 V. vinifera Pavir.Ca00978
Pavir.J12238 A. halleri Araha.52017s0001
Pavir.J12238 A. halleri Araha.5485s0004
Pavir.J12238 P. virgatum Pavir.J08443
Pavir.J12238 P. virgatum Pavir.Ca00978
Pavir.J12238 C. grandiflora Cagra.1472s0006
Pavir.J12238 P. virgatum Pavir.J08443
Pavir.J12238 P. virgatum Pavir.Ca00978
Pavir.J12238 C. papaya evm.TU.supercontig_131.66
Pavir.J12238 P. virgatum Pavir.J08443
Pavir.J12238 P. virgatum Pavir.Ca00978
Pavir.J12238 R. communis 30150.t000004
Pavir.J12238 R. communis 29900.t000052
Pavir.J12238 P. virgatum Pavir.J08443
Pavir.J12238 P. virgatum Pavir.Ca00978
Pavir.J12238 C. sativus Cucsa.273480
Pavir.J12238 P. virgatum Pavir.J08443
Pavir.J12238 P. virgatum Pavir.Ca00978
Pavir.J12238 C. sinensis orange1.1g018314m.g
Pavir.J12238 P. virgatum Pavir.J08443
Pavir.J12238 P. virgatum Pavir.Ca00978
Pavir.J12238 A. thaliana AT3G15020
Pavir.J12238 A. thaliana AT1G53240
Pavir.J12238 P. virgatum Pavir.J08443
Pavir.J12238 P. virgatum Pavir.Ca00978
Pavir.J12238 E. salsugineum Thhalv10011552m.g
Pavir.J12238 P. virgatum Pavir.J08443
Pavir.J12238 P. virgatum Pavir.Ca00978

26 Rna Seq Expressionss

Countvariance Method Conflo Count Status Countdispersionvar Library Expression Level Abundance Confhi Locus Expression Level Countuncertaintyvar
  cufflinks   4039.813 OK   High 20.514   High  
  cufflinks   2339.644 OK   High 14.068      
  cufflinks   3158.674 OK   High 19.475   High  
  cufflinks   719.361 OK     4.231      
  cufflinks   1681.848 OK   High 11.841      
  cufflinks   4639.353 OK   High 23.113   High  
  cufflinks   1656.221 OK   High 11.655      
  cufflinks   2416.773 OK   High 14.04      
  cufflinks   2918.711 OK   High 18.446   High  
  cufflinks   848.354 OK   High 5.721      
  cufflinks   670.081 OK     3.265   Low  
  cufflinks   963.523 OK   High 6.783      
  cufflinks   896.329 OK   High 5.44      
  cufflinks   1017.845 OK   High 5.05      
  cufflinks   446.263 OK     2.832   Low  
  cufflinks   455.487 OK     3.009   Low  
  cufflinks   448.528 OK     3.039   Low  
  cufflinks   1888.872 OK   High 8.827      
  cufflinks   701.645 OK     4.912      
  cufflinks   2467.103 OK   High 13.747      
  cufflinks   457.434 OK     2.878   Low  
  cufflinks   646.427 OK     4.394      
  cufflinks   557.644 OK     3.991      
  cufflinks   1691.367 OK   High 10.718      
  cufflinks   1090.73 OK   High 6.861      
  cufflinks   2723.658 OK   High 16.787   High