Gene : Thecc1EG032306 T. cacao v1.1
Defline:  (1 of 1) 6.1.1.18 - Glutamine--tRNA ligase / Glutaminyl-tRNA synthetase Genomic Order:  1353
Name:  ? Thecc1EG032306 Secondary Identifier:  ? PAC:27444765
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao TRNA-CHARGING-PWY Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG032306 0.5kb upstream 0.5kb upstream 15197 true scaffold_7: 10001703-10016899 Theobroma cacao
Thecc1EG032306 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 10016400-10016899 Theobroma cacao
Thecc1EG032306 0.5kb downstream 0.5kb downstream 15197 true scaffold_7: 10001203-10016399 Theobroma cacao
Thecc1EG032306 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 10001203-10001702 Theobroma cacao
Thecc1EG032306 1.0kb upstream 1.0kb upstream 15697 true scaffold_7: 10001703-10017399 Theobroma cacao
Thecc1EG032306 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 10016400-10017399 Theobroma cacao
Thecc1EG032306 1.0kb downstream 1.0kb downstream 15697 true scaffold_7: 10000703-10016399 Theobroma cacao
Thecc1EG032306 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 10000703-10001702 Theobroma cacao
Thecc1EG032306 2.0kb upstream 2.0kb upstream 16697 true scaffold_7: 10001703-10018399 Theobroma cacao
Thecc1EG032306 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 10016400-10018399 Theobroma cacao
Thecc1EG032306 2.0kb downstream 2.0kb downstream 16697 true scaffold_7: 9999703-10016399 Theobroma cacao
Thecc1EG032306 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 9999703-10001702 Theobroma cacao
Thecc1EG032306 5.0kb upstream 5.0kb upstream 19697 true scaffold_7: 10001703-10021399 Theobroma cacao
Thecc1EG032306 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 10016400-10021399 Theobroma cacao
Thecc1EG032306 5.0kb downstream 5.0kb downstream 19697 true scaffold_7: 9996703-10016399 Theobroma cacao
Thecc1EG032306 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 9996703-10001702 Theobroma cacao
Thecc1EG032306 10.0kb upstream 10.0kb upstream 24697 true scaffold_7: 10001703-10026399 Theobroma cacao
Thecc1EG032306 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 10016400-10026399 Theobroma cacao
Thecc1EG032306 10.0kb downstream 10.0kb downstream 24697 true scaffold_7: 9991703-10016399 Theobroma cacao
Thecc1EG032306 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 9991703-10001702 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123834323 5264 Brassicales-Malvales View MSA
124337419 5266 SBM View MSA
124240630 5268 Malvidae View MSA
124062151 5270 Rosid View MSA
123744952 5271 Pentapetalae View MSA
122789610 5272 Eudicot View MSA
122046880 5273 Angiosperm View MSA
121346731 5274 Embryophyte View MSA
123424701 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain