Gene : Thecc1EG026607 T. cacao v1.1
Defline:  (1 of 1) PTHR30373:SF2 - UPF0603 PROTEIN YGCG Genomic Order:  3060
Name:  ? Thecc1EG026607 Secondary Identifier:  ? PAC:27424879
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-5083 Theobroma cacao pathologic  
Tcacao PWY-6348 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG026607 0.5kb upstream 0.5kb upstream 2565 true scaffold_5: 39256303-39258867 Theobroma cacao
Thecc1EG026607 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 39258368-39258867 Theobroma cacao
Thecc1EG026607 0.5kb downstream 0.5kb downstream 2565 true scaffold_5: 39255803-39258367 Theobroma cacao
Thecc1EG026607 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 39255803-39256302 Theobroma cacao
Thecc1EG026607 1.0kb upstream 1.0kb upstream 3065 true scaffold_5: 39256303-39259367 Theobroma cacao
Thecc1EG026607 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 39258368-39259367 Theobroma cacao
Thecc1EG026607 1.0kb downstream 1.0kb downstream 3065 true scaffold_5: 39255303-39258367 Theobroma cacao
Thecc1EG026607 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 39255303-39256302 Theobroma cacao
Thecc1EG026607 2.0kb upstream 2.0kb upstream 4065 true scaffold_5: 39256303-39260367 Theobroma cacao
Thecc1EG026607 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 39258368-39260367 Theobroma cacao
Thecc1EG026607 2.0kb downstream 2.0kb downstream 4065 true scaffold_5: 39254303-39258367 Theobroma cacao
Thecc1EG026607 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 39254303-39256302 Theobroma cacao
Thecc1EG026607 5.0kb upstream 5.0kb upstream 7065 true scaffold_5: 39256303-39263367 Theobroma cacao
Thecc1EG026607 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 39258368-39263367 Theobroma cacao
Thecc1EG026607 5.0kb downstream 5.0kb downstream 7065 true scaffold_5: 39251303-39258367 Theobroma cacao
Thecc1EG026607 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 39251303-39256302 Theobroma cacao
Thecc1EG026607 10.0kb upstream 10.0kb upstream 12065 true scaffold_5: 39256303-39268367 Theobroma cacao
Thecc1EG026607 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 39258368-39268367 Theobroma cacao
Thecc1EG026607 10.0kb downstream 10.0kb downstream 12065 true scaffold_5: 39246303-39258367 Theobroma cacao
Thecc1EG026607 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 39246303-39256302 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123830968 5264 Brassicales-Malvales View MSA
124342350 5266 SBM View MSA
124243217 5268 Malvidae View MSA
124061871 5270 Rosid View MSA
123737495 5271 Pentapetalae View MSA
122787639 5272 Eudicot View MSA
122046154 5273 Angiosperm View MSA
121349050 5274 Embryophyte View MSA
123424307 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain