Gene : Thecc1EG007751 T. cacao v1.1
Defline:  (1 of 1) PTHR11777//PTHR11777:SF18 - ALANYL-TRNA SYNTHETASE // ALANINE--TRNA LIGASE, CYTOPLASMIC Genomic Order:  1557
Name:  ? Thecc1EG007751 Secondary Identifier:  ? PAC:27461290
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao TRNA-CHARGING-PWY Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG007751 0.5kb upstream 0.5kb upstream 21056 true scaffold_2: 8734784-8755839 Theobroma cacao
Thecc1EG007751 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 8755340-8755839 Theobroma cacao
Thecc1EG007751 0.5kb downstream 0.5kb downstream 21056 true scaffold_2: 8734284-8755339 Theobroma cacao
Thecc1EG007751 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 8734284-8734783 Theobroma cacao
Thecc1EG007751 1.0kb upstream 1.0kb upstream 21556 true scaffold_2: 8734784-8756339 Theobroma cacao
Thecc1EG007751 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 8755340-8756339 Theobroma cacao
Thecc1EG007751 1.0kb downstream 1.0kb downstream 21556 true scaffold_2: 8733784-8755339 Theobroma cacao
Thecc1EG007751 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 8733784-8734783 Theobroma cacao
Thecc1EG007751 2.0kb upstream 2.0kb upstream 22556 true scaffold_2: 8734784-8757339 Theobroma cacao
Thecc1EG007751 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 8755340-8757339 Theobroma cacao
Thecc1EG007751 2.0kb downstream 2.0kb downstream 22556 true scaffold_2: 8732784-8755339 Theobroma cacao
Thecc1EG007751 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 8732784-8734783 Theobroma cacao
Thecc1EG007751 5.0kb upstream 5.0kb upstream 25556 true scaffold_2: 8734784-8760339 Theobroma cacao
Thecc1EG007751 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 8755340-8760339 Theobroma cacao
Thecc1EG007751 5.0kb downstream 5.0kb downstream 25556 true scaffold_2: 8729784-8755339 Theobroma cacao
Thecc1EG007751 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 8729784-8734783 Theobroma cacao
Thecc1EG007751 10.0kb upstream 10.0kb upstream 30556 true scaffold_2: 8734784-8765339 Theobroma cacao
Thecc1EG007751 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 8755340-8765339 Theobroma cacao
Thecc1EG007751 10.0kb downstream 10.0kb downstream 30556 true scaffold_2: 8724784-8755339 Theobroma cacao
Thecc1EG007751 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 8724784-8734783 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123830021 5264 Brassicales-Malvales View MSA
124341952 5266 SBM View MSA
124240298 5268 Malvidae View MSA
124063784 5270 Rosid View MSA
123740226 5271 Pentapetalae View MSA
122791486 5272 Eudicot View MSA
122047019 5273 Angiosperm View MSA
121346985 5274 Embryophyte View MSA
123424131 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain