Gene : Phvul.011G031100 P. vulgaris v2.1
Defline:  (1 of 1) PTHR11777:SF18 - ALANINE--TRNA LIGASE, CYTOPLASMIC Genomic Order:  327
Name:  ? Phvul.011G031100 Secondary Identifier:  ? PAC:37154702
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris TRNA-CHARGING-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G031100 0.5kb upstream 0.5kb upstream 11847 true Chr11: 2875198-2887044 Phaseolus vulgaris
Phvul.011G031100 0.5kb upstream 0.5kb upstream 500 false Chr11: 2886545-2887044 Phaseolus vulgaris
Phvul.011G031100 0.5kb downstream 0.5kb downstream 11847 true Chr11: 2874698-2886544 Phaseolus vulgaris
Phvul.011G031100 0.5kb downstream 0.5kb downstream 500 false Chr11: 2874698-2875197 Phaseolus vulgaris
Phvul.011G031100 1.0kb upstream 1.0kb upstream 12347 true Chr11: 2875198-2887544 Phaseolus vulgaris
Phvul.011G031100 1.0kb upstream 1.0kb upstream 1000 false Chr11: 2886545-2887544 Phaseolus vulgaris
Phvul.011G031100 1.0kb downstream 1.0kb downstream 12347 true Chr11: 2874198-2886544 Phaseolus vulgaris
Phvul.011G031100 1.0kb downstream 1.0kb downstream 1000 false Chr11: 2874198-2875197 Phaseolus vulgaris
Phvul.011G031100 2.0kb upstream 2.0kb upstream 13347 true Chr11: 2875198-2888544 Phaseolus vulgaris
Phvul.011G031100 2.0kb upstream 2.0kb upstream 2000 false Chr11: 2886545-2888544 Phaseolus vulgaris
Phvul.011G031100 2.0kb downstream 2.0kb downstream 13347 true Chr11: 2873198-2886544 Phaseolus vulgaris
Phvul.011G031100 2.0kb downstream 2.0kb downstream 2000 false Chr11: 2873198-2875197 Phaseolus vulgaris
Phvul.011G031100 5.0kb upstream 5.0kb upstream 16347 true Chr11: 2875198-2891544 Phaseolus vulgaris
Phvul.011G031100 5.0kb upstream 5.0kb upstream 5000 false Chr11: 2886545-2891544 Phaseolus vulgaris
Phvul.011G031100 5.0kb downstream 5.0kb downstream 16347 true Chr11: 2870198-2886544 Phaseolus vulgaris
Phvul.011G031100 5.0kb downstream 5.0kb downstream 5000 false Chr11: 2870198-2875197 Phaseolus vulgaris
Phvul.011G031100 10.0kb upstream 10.0kb upstream 21347 true Chr11: 2875198-2896544 Phaseolus vulgaris
Phvul.011G031100 10.0kb upstream 10.0kb upstream 10000 false Chr11: 2886545-2896544 Phaseolus vulgaris
Phvul.011G031100 10.0kb downstream 10.0kb downstream 21347 true Chr11: 2865198-2886544 Phaseolus vulgaris
Phvul.011G031100 10.0kb downstream 10.0kb downstream 10000 false Chr11: 2865198-2875197 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307158 5265 Fabidae View MSA
124063784 5270 Rosid View MSA
123740226 5271 Pentapetalae View MSA
122791486 5272 Eudicot View MSA
122047019 5273 Angiosperm View MSA
121346985 5274 Embryophyte View MSA
123424131 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 28.866 0.0 77.8365   Low
cufflinks 43.5988 0.0 122.265 High  
cufflinks 41.6658 0.0 116.551 High  
cufflinks 31.7871 0.0 85.6348   Low
cufflinks 39.2835 0.0 108.408 High  
cufflinks 41.0553 0.0 114.561 High  
cufflinks 63.508 0.0 186.607 High High
cufflinks 57.834 0.0 168.546 High  
cufflinks 72.3235 0.0 215.648 High High
cufflinks 55.2724 0.0 159.185 High  
cufflinks 39.0219 0.0 107.726 High  

0 Strain