Gene : Phvul.006G216300 P. vulgaris v2.1

Defline:  (1 of 1) 2.7.4.7 - Phosphomethylpyrimidine kinase / Hydroxymethylpyrimidine phosphokinase Genomic Order:  2181
Name:  ? Phvul.006G216300 Secondary Identifier:  ? PAC:37173117

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-6890 Phaseolus vulgaris pathologic  
Pvulgaris PWY-6908 Phaseolus vulgaris pathologic  
Pvulgaris PWY-6910 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G216300 0.5kb upstream 0.5kb upstream 5916 true Chr06: 30895253-30901168 Phaseolus vulgaris
Phvul.006G216300 0.5kb upstream 0.5kb upstream 500 false Chr06: 30895253-30895752 Phaseolus vulgaris
Phvul.006G216300 0.5kb downstream 0.5kb downstream 5916 true Chr06: 30895753-30901668 Phaseolus vulgaris
Phvul.006G216300 0.5kb downstream 0.5kb downstream 500 false Chr06: 30901169-30901668 Phaseolus vulgaris
Phvul.006G216300 1.0kb upstream 1.0kb upstream 6416 true Chr06: 30894753-30901168 Phaseolus vulgaris
Phvul.006G216300 1.0kb upstream 1.0kb upstream 1000 false Chr06: 30894753-30895752 Phaseolus vulgaris
Phvul.006G216300 1.0kb downstream 1.0kb downstream 6416 true Chr06: 30895753-30902168 Phaseolus vulgaris
Phvul.006G216300 1.0kb downstream 1.0kb downstream 1000 false Chr06: 30901169-30902168 Phaseolus vulgaris
Phvul.006G216300 2.0kb upstream 2.0kb upstream 7416 true Chr06: 30893753-30901168 Phaseolus vulgaris
Phvul.006G216300 2.0kb upstream 2.0kb upstream 2000 false Chr06: 30893753-30895752 Phaseolus vulgaris
Phvul.006G216300 2.0kb downstream 2.0kb downstream 7416 true Chr06: 30895753-30903168 Phaseolus vulgaris
Phvul.006G216300 2.0kb downstream 2.0kb downstream 2000 false Chr06: 30901169-30903168 Phaseolus vulgaris
Phvul.006G216300 5.0kb upstream 5.0kb upstream 10416 true Chr06: 30890753-30901168 Phaseolus vulgaris
Phvul.006G216300 5.0kb upstream 5.0kb upstream 5000 false Chr06: 30890753-30895752 Phaseolus vulgaris
Phvul.006G216300 5.0kb downstream 5.0kb downstream 10416 true Chr06: 30895753-30906168 Phaseolus vulgaris
Phvul.006G216300 5.0kb downstream 5.0kb downstream 5000 false Chr06: 30901169-30906168 Phaseolus vulgaris
Phvul.006G216300 10.0kb upstream 10.0kb upstream 15416 true Chr06: 30885753-30901168 Phaseolus vulgaris
Phvul.006G216300 10.0kb upstream 10.0kb upstream 10000 false Chr06: 30885753-30895752 Phaseolus vulgaris
Phvul.006G216300 10.0kb downstream 10.0kb downstream 15416 true Chr06: 30895753-30911168 Phaseolus vulgaris
Phvul.006G216300 10.0kb downstream 10.0kb downstream 10000 false Chr06: 30901169-30911168 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309007 5265 Fabidae View MSA
124063802 5270 Rosid View MSA
123739977 5271 Pentapetalae View MSA
122792526 5272 Eudicot View MSA
122045389 5273 Angiosperm View MSA
121344045 5274 Embryophyte View MSA
123424693 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.56343 0.0 26.9628    
cufflinks 8.26334 0.0 29.7704    
cufflinks 60.7415 0.0 214.342 High High
cufflinks 10.9323 0.0 37.3974    
cufflinks 11.0961 0.0 37.465    
cufflinks 16.325 0.0 52.2528    
cufflinks 4.69364 0.0 16.0266    
cufflinks 3.62867 0.0 13.0367   Low
cufflinks 6.08047 0.0 19.822    
cufflinks 17.3946 0.0 55.5213    
cufflinks 6.60732 0.0 24.6453    

0 Strain