Gene : Phvul.005G180400 P. vulgaris v2.1
Defline:  (1 of 1) PTHR11679:SF1 - VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 33B Genomic Order:  1703
Name:  ? Phvul.005G180400 Secondary Identifier:  ? PAC:37152959
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G180400 0.5kb upstream 0.5kb upstream 11389 true Chr05: 40544975-40556363 Phaseolus vulgaris
Phvul.005G180400 0.5kb upstream 0.5kb upstream 500 false Chr05: 40544975-40545474 Phaseolus vulgaris
Phvul.005G180400 0.5kb downstream 0.5kb downstream 11389 true Chr05: 40545475-40556863 Phaseolus vulgaris
Phvul.005G180400 0.5kb downstream 0.5kb downstream 500 false Chr05: 40556364-40556863 Phaseolus vulgaris
Phvul.005G180400 1.0kb upstream 1.0kb upstream 11889 true Chr05: 40544475-40556363 Phaseolus vulgaris
Phvul.005G180400 1.0kb upstream 1.0kb upstream 1000 false Chr05: 40544475-40545474 Phaseolus vulgaris
Phvul.005G180400 1.0kb downstream 1.0kb downstream 11889 true Chr05: 40545475-40557363 Phaseolus vulgaris
Phvul.005G180400 1.0kb downstream 1.0kb downstream 1000 false Chr05: 40556364-40557363 Phaseolus vulgaris
Phvul.005G180400 2.0kb upstream 2.0kb upstream 12889 true Chr05: 40543475-40556363 Phaseolus vulgaris
Phvul.005G180400 2.0kb upstream 2.0kb upstream 2000 false Chr05: 40543475-40545474 Phaseolus vulgaris
Phvul.005G180400 2.0kb downstream 2.0kb downstream 12889 true Chr05: 40545475-40558363 Phaseolus vulgaris
Phvul.005G180400 2.0kb downstream 2.0kb downstream 2000 false Chr05: 40556364-40558363 Phaseolus vulgaris
Phvul.005G180400 5.0kb upstream 5.0kb upstream 15889 true Chr05: 40540475-40556363 Phaseolus vulgaris
Phvul.005G180400 5.0kb upstream 5.0kb upstream 5000 false Chr05: 40540475-40545474 Phaseolus vulgaris
Phvul.005G180400 5.0kb downstream 5.0kb downstream 15889 true Chr05: 40545475-40561363 Phaseolus vulgaris
Phvul.005G180400 5.0kb downstream 5.0kb downstream 5000 false Chr05: 40556364-40561363 Phaseolus vulgaris
Phvul.005G180400 10.0kb upstream 10.0kb upstream 20889 true Chr05: 40535475-40556363 Phaseolus vulgaris
Phvul.005G180400 10.0kb upstream 10.0kb upstream 10000 false Chr05: 40535475-40545474 Phaseolus vulgaris
Phvul.005G180400 10.0kb downstream 10.0kb downstream 20889 true Chr05: 40545475-40566363 Phaseolus vulgaris
Phvul.005G180400 10.0kb downstream 10.0kb downstream 10000 false Chr05: 40556364-40566363 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303848 5265 Fabidae View MSA
124060687 5270 Rosid View MSA
123752056 5271 Pentapetalae View MSA
122787734 5272 Eudicot View MSA
122044199 5273 Angiosperm View MSA
121343889 5274 Embryophyte View MSA
123428072 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.76841 0.0 26.5949    
cufflinks 7.84531 0.0 24.4514   Low
cufflinks 11.4486 0.0 38.9687   High
cufflinks 9.86079 0.0 29.813    
cufflinks 7.03125 0.0 22.3226   Low
cufflinks 9.86168 0.0 29.5059    
cufflinks 10.2328 0.0 30.3666    
cufflinks 10.1865 0.0 30.1673    
cufflinks 9.8777 0.0 29.7814    
cufflinks 11.703 0.0 34.2017   High
cufflinks 7.62023 0.0 24.1131   Low

0 Strain