Gene : Phvul.006G022400 P. vulgaris v2.1
Defline:  (1 of 1) PTHR12811 - VACUOLAR PROTEIN SORTING VPS16 Genomic Order:  176
Name:  ? Phvul.006G022400 Secondary Identifier:  ? PAC:37172252
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G022400 0.5kb upstream 0.5kb upstream 16704 true Chr06: 9144426-9161129 Phaseolus vulgaris
Phvul.006G022400 0.5kb upstream 0.5kb upstream 500 false Chr06: 9144426-9144925 Phaseolus vulgaris
Phvul.006G022400 0.5kb downstream 0.5kb downstream 16704 true Chr06: 9144926-9161629 Phaseolus vulgaris
Phvul.006G022400 0.5kb downstream 0.5kb downstream 500 false Chr06: 9161130-9161629 Phaseolus vulgaris
Phvul.006G022400 1.0kb upstream 1.0kb upstream 17204 true Chr06: 9143926-9161129 Phaseolus vulgaris
Phvul.006G022400 1.0kb upstream 1.0kb upstream 1000 false Chr06: 9143926-9144925 Phaseolus vulgaris
Phvul.006G022400 1.0kb downstream 1.0kb downstream 17204 true Chr06: 9144926-9162129 Phaseolus vulgaris
Phvul.006G022400 1.0kb downstream 1.0kb downstream 1000 false Chr06: 9161130-9162129 Phaseolus vulgaris
Phvul.006G022400 2.0kb upstream 2.0kb upstream 18204 true Chr06: 9142926-9161129 Phaseolus vulgaris
Phvul.006G022400 2.0kb upstream 2.0kb upstream 2000 false Chr06: 9142926-9144925 Phaseolus vulgaris
Phvul.006G022400 2.0kb downstream 2.0kb downstream 18204 true Chr06: 9144926-9163129 Phaseolus vulgaris
Phvul.006G022400 2.0kb downstream 2.0kb downstream 2000 false Chr06: 9161130-9163129 Phaseolus vulgaris
Phvul.006G022400 5.0kb upstream 5.0kb upstream 21204 true Chr06: 9139926-9161129 Phaseolus vulgaris
Phvul.006G022400 5.0kb upstream 5.0kb upstream 5000 false Chr06: 9139926-9144925 Phaseolus vulgaris
Phvul.006G022400 5.0kb downstream 5.0kb downstream 21204 true Chr06: 9144926-9166129 Phaseolus vulgaris
Phvul.006G022400 5.0kb downstream 5.0kb downstream 5000 false Chr06: 9161130-9166129 Phaseolus vulgaris
Phvul.006G022400 10.0kb upstream 10.0kb upstream 26204 true Chr06: 9134926-9161129 Phaseolus vulgaris
Phvul.006G022400 10.0kb upstream 10.0kb upstream 10000 false Chr06: 9134926-9144925 Phaseolus vulgaris
Phvul.006G022400 10.0kb downstream 10.0kb downstream 26204 true Chr06: 9144926-9171129 Phaseolus vulgaris
Phvul.006G022400 10.0kb downstream 10.0kb downstream 10000 false Chr06: 9161130-9171129 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307893 5265 Fabidae View MSA
124062842 5270 Rosid View MSA
123745569 5271 Pentapetalae View MSA
122788117 5272 Eudicot View MSA
122043235 5273 Angiosperm View MSA
121346488 5274 Embryophyte View MSA
123426973 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.53816 0.0 12.3847   Low
cufflinks 7.56476 0.0 19.9047    
cufflinks 7.46658 0.0 19.6867    
cufflinks 6.45405 0.0 17.1607    
cufflinks 9.45473 0.0 24.6034    
cufflinks 8.28319 0.0 21.6904    
cufflinks 9.25096 0.0 24.0858    
cufflinks 7.93843 0.0 20.8373    
cufflinks 10.2843 0.0 26.6985    
cufflinks 9.73665 0.0 25.3075    
cufflinks 10.0968 0.0 26.2219    

0 Strain