Gene : Phvul.006G046900 P. vulgaris v2.1
Defline:  (1 of 2) K12606 - CCR4-NOT transcription complex subunit 9 (RCD1, CNOT9, CAF40) Genomic Order:  422
Name:  ? Phvul.006G046900 Secondary Identifier:  ? PAC:37173716
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G046900 0.5kb upstream 0.5kb upstream 9044 true Chr06: 15050743-15059786 Phaseolus vulgaris
Phvul.006G046900 0.5kb upstream 0.5kb upstream 500 false Chr06: 15059287-15059786 Phaseolus vulgaris
Phvul.006G046900 0.5kb downstream 0.5kb downstream 9044 true Chr06: 15050243-15059286 Phaseolus vulgaris
Phvul.006G046900 0.5kb downstream 0.5kb downstream 500 false Chr06: 15050243-15050742 Phaseolus vulgaris
Phvul.006G046900 1.0kb upstream 1.0kb upstream 9544 true Chr06: 15050743-15060286 Phaseolus vulgaris
Phvul.006G046900 1.0kb upstream 1.0kb upstream 1000 false Chr06: 15059287-15060286 Phaseolus vulgaris
Phvul.006G046900 1.0kb downstream 1.0kb downstream 9544 true Chr06: 15049743-15059286 Phaseolus vulgaris
Phvul.006G046900 1.0kb downstream 1.0kb downstream 1000 false Chr06: 15049743-15050742 Phaseolus vulgaris
Phvul.006G046900 2.0kb upstream 2.0kb upstream 10544 true Chr06: 15050743-15061286 Phaseolus vulgaris
Phvul.006G046900 2.0kb upstream 2.0kb upstream 2000 false Chr06: 15059287-15061286 Phaseolus vulgaris
Phvul.006G046900 2.0kb downstream 2.0kb downstream 10544 true Chr06: 15048743-15059286 Phaseolus vulgaris
Phvul.006G046900 2.0kb downstream 2.0kb downstream 2000 false Chr06: 15048743-15050742 Phaseolus vulgaris
Phvul.006G046900 5.0kb upstream 5.0kb upstream 13544 true Chr06: 15050743-15064286 Phaseolus vulgaris
Phvul.006G046900 5.0kb upstream 5.0kb upstream 5000 false Chr06: 15059287-15064286 Phaseolus vulgaris
Phvul.006G046900 5.0kb downstream 5.0kb downstream 13544 true Chr06: 15045743-15059286 Phaseolus vulgaris
Phvul.006G046900 5.0kb downstream 5.0kb downstream 5000 false Chr06: 15045743-15050742 Phaseolus vulgaris
Phvul.006G046900 10.0kb upstream 10.0kb upstream 18544 true Chr06: 15050743-15069286 Phaseolus vulgaris
Phvul.006G046900 10.0kb upstream 10.0kb upstream 10000 false Chr06: 15059287-15069286 Phaseolus vulgaris
Phvul.006G046900 10.0kb downstream 10.0kb downstream 18544 true Chr06: 15040743-15059286 Phaseolus vulgaris
Phvul.006G046900 10.0kb downstream 10.0kb downstream 10000 false Chr06: 15040743-15050742 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303523 5265 Fabidae View MSA
124066186 5270 Rosid View MSA
123748122 5271 Pentapetalae View MSA
122792853 5272 Eudicot View MSA
122043480 5273 Angiosperm View MSA
121346204 5274 Embryophyte View MSA
123424774 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.5642 0.0 49.0062    
cufflinks 16.7521 0.0 44.5877    
cufflinks 18.6179 0.0 49.0887    
cufflinks 19.8449 0.0 52.338    
cufflinks 16.273 0.0 43.4435    
cufflinks 13.5822 0.0 36.7245   Low
cufflinks 18.0765 0.0 47.9203    
cufflinks 23.077 0.0 60.2352   High
cufflinks 17.7857 0.0 47.2692    
cufflinks 21.4847 0.0 56.2634   High
cufflinks 14.4459 0.0 38.9702   Low

0 Strain