Gene : Phvul.004G119800 P. vulgaris v2.1
Defline:  (1 of 3) K19044 - E3 ubiquitin-protein ligase XBAT32/33 [EC:6.3.2.19] (XBAT32_33) Genomic Order:  1223
Name:  ? Phvul.004G119800 Secondary Identifier:  ? PAC:37163556
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G119800 0.5kb upstream 0.5kb upstream 9629 true Chr04: 40879578-40889206 Phaseolus vulgaris
Phvul.004G119800 0.5kb upstream 0.5kb upstream 500 false Chr04: 40888707-40889206 Phaseolus vulgaris
Phvul.004G119800 0.5kb downstream 0.5kb downstream 9629 true Chr04: 40879078-40888706 Phaseolus vulgaris
Phvul.004G119800 0.5kb downstream 0.5kb downstream 500 false Chr04: 40879078-40879577 Phaseolus vulgaris
Phvul.004G119800 1.0kb upstream 1.0kb upstream 10129 true Chr04: 40879578-40889706 Phaseolus vulgaris
Phvul.004G119800 1.0kb upstream 1.0kb upstream 1000 false Chr04: 40888707-40889706 Phaseolus vulgaris
Phvul.004G119800 1.0kb downstream 1.0kb downstream 10129 true Chr04: 40878578-40888706 Phaseolus vulgaris
Phvul.004G119800 1.0kb downstream 1.0kb downstream 1000 false Chr04: 40878578-40879577 Phaseolus vulgaris
Phvul.004G119800 2.0kb upstream 2.0kb upstream 11129 true Chr04: 40879578-40890706 Phaseolus vulgaris
Phvul.004G119800 2.0kb upstream 2.0kb upstream 2000 false Chr04: 40888707-40890706 Phaseolus vulgaris
Phvul.004G119800 2.0kb downstream 2.0kb downstream 11129 true Chr04: 40877578-40888706 Phaseolus vulgaris
Phvul.004G119800 2.0kb downstream 2.0kb downstream 2000 false Chr04: 40877578-40879577 Phaseolus vulgaris
Phvul.004G119800 5.0kb upstream 5.0kb upstream 14129 true Chr04: 40879578-40893706 Phaseolus vulgaris
Phvul.004G119800 5.0kb upstream 5.0kb upstream 5000 false Chr04: 40888707-40893706 Phaseolus vulgaris
Phvul.004G119800 5.0kb downstream 5.0kb downstream 14129 true Chr04: 40874578-40888706 Phaseolus vulgaris
Phvul.004G119800 5.0kb downstream 5.0kb downstream 5000 false Chr04: 40874578-40879577 Phaseolus vulgaris
Phvul.004G119800 10.0kb upstream 10.0kb upstream 19129 true Chr04: 40879578-40898706 Phaseolus vulgaris
Phvul.004G119800 10.0kb upstream 10.0kb upstream 10000 false Chr04: 40888707-40898706 Phaseolus vulgaris
Phvul.004G119800 10.0kb downstream 10.0kb downstream 19129 true Chr04: 40869578-40888706 Phaseolus vulgaris
Phvul.004G119800 10.0kb downstream 10.0kb downstream 10000 false Chr04: 40869578-40879577 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311644 5265 Fabidae View MSA
124061674 5270 Rosid View MSA
123746531 5271 Pentapetalae View MSA
122792004 5272 Eudicot View MSA
122042206 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121348775 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.88225 0.0 16.2943    
cufflinks 5.76834 0.0 16.034    
cufflinks 4.11384 0.0 11.7738   Low
cufflinks 6.58205 0.0 18.149    
cufflinks 6.20251 0.0 17.1414    
cufflinks 6.70793 0.0 18.3987    
cufflinks 12.6534 0.0 33.1259   High
cufflinks 10.1669 0.0 26.9659    
cufflinks 15.8999 0.0 41.281   High
cufflinks 5.64726 0.0 15.7324    
cufflinks 6.86017 0.0 18.8173    

0 Strain