Gene : Phvul.007G017800 P. vulgaris v2.1
Defline:  (1 of 1) K18752 - transportin-1 (TNPO1) Genomic Order:  175
Name:  ? Phvul.007G017800 Secondary Identifier:  ? PAC:37167382
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G017800 0.5kb upstream 0.5kb upstream 14887 true Chr07: 1197622-1212508 Phaseolus vulgaris
Phvul.007G017800 0.5kb upstream 0.5kb upstream 500 false Chr07: 1212009-1212508 Phaseolus vulgaris
Phvul.007G017800 0.5kb downstream 0.5kb downstream 14887 true Chr07: 1197122-1212008 Phaseolus vulgaris
Phvul.007G017800 0.5kb downstream 0.5kb downstream 500 false Chr07: 1197122-1197621 Phaseolus vulgaris
Phvul.007G017800 1.0kb upstream 1.0kb upstream 15387 true Chr07: 1197622-1213008 Phaseolus vulgaris
Phvul.007G017800 1.0kb upstream 1.0kb upstream 1000 false Chr07: 1212009-1213008 Phaseolus vulgaris
Phvul.007G017800 1.0kb downstream 1.0kb downstream 15387 true Chr07: 1196622-1212008 Phaseolus vulgaris
Phvul.007G017800 1.0kb downstream 1.0kb downstream 1000 false Chr07: 1196622-1197621 Phaseolus vulgaris
Phvul.007G017800 2.0kb upstream 2.0kb upstream 16387 true Chr07: 1197622-1214008 Phaseolus vulgaris
Phvul.007G017800 2.0kb upstream 2.0kb upstream 2000 false Chr07: 1212009-1214008 Phaseolus vulgaris
Phvul.007G017800 2.0kb downstream 2.0kb downstream 16387 true Chr07: 1195622-1212008 Phaseolus vulgaris
Phvul.007G017800 2.0kb downstream 2.0kb downstream 2000 false Chr07: 1195622-1197621 Phaseolus vulgaris
Phvul.007G017800 5.0kb upstream 5.0kb upstream 19387 true Chr07: 1197622-1217008 Phaseolus vulgaris
Phvul.007G017800 5.0kb upstream 5.0kb upstream 5000 false Chr07: 1212009-1217008 Phaseolus vulgaris
Phvul.007G017800 5.0kb downstream 5.0kb downstream 19387 true Chr07: 1192622-1212008 Phaseolus vulgaris
Phvul.007G017800 5.0kb downstream 5.0kb downstream 5000 false Chr07: 1192622-1197621 Phaseolus vulgaris
Phvul.007G017800 10.0kb upstream 10.0kb upstream 24387 true Chr07: 1197622-1222008 Phaseolus vulgaris
Phvul.007G017800 10.0kb upstream 10.0kb upstream 10000 false Chr07: 1212009-1222008 Phaseolus vulgaris
Phvul.007G017800 10.0kb downstream 10.0kb downstream 24387 true Chr07: 1187622-1212008 Phaseolus vulgaris
Phvul.007G017800 10.0kb downstream 10.0kb downstream 10000 false Chr07: 1187622-1197621 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026329 5273 Angiosperm View MSA
122304393 5265 Fabidae View MSA
124064274 5270 Rosid View MSA
123739927 5271 Pentapetalae View MSA
122787120 5272 Eudicot View MSA
121344720 5274 Embryophyte View MSA
123426345 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.461 0.0 39.7138   Low
cufflinks 22.9378 0.0 103.419    
cufflinks 26.8246 0.0 90.214    
cufflinks 24.7812 0.0 108.455    
cufflinks 35.0925 0.0 145.705 High  
cufflinks 22.4368 0.0 85.8272    
cufflinks 24.3692 0.0 93.4012    
cufflinks 21.5114 0.0 84.7918    
cufflinks 32.2819 0.0 147.687 High  
cufflinks 44.2365 0.0 192.781 High High
cufflinks 28.7127 0.0 133.88    

0 Strain