Gene : Phvul.002G175500 P. vulgaris v2.1
Defline:  (1 of 1) PTHR11771:SF60 - LIPOXYGENASE 6, CHLOROPLASTIC Genomic Order:  1734
Name:  ? Phvul.002G175500 Secondary Identifier:  ? PAC:37178407
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-5409 Phaseolus vulgaris pathologic  
Pvulgaris PWY-735 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G175500 0.5kb upstream 0.5kb upstream 5769 true Chr02: 33368539-33374307 Phaseolus vulgaris
Phvul.002G175500 0.5kb upstream 0.5kb upstream 500 false Chr02: 33368539-33369038 Phaseolus vulgaris
Phvul.002G175500 0.5kb downstream 0.5kb downstream 5769 true Chr02: 33369039-33374807 Phaseolus vulgaris
Phvul.002G175500 0.5kb downstream 0.5kb downstream 500 false Chr02: 33374308-33374807 Phaseolus vulgaris
Phvul.002G175500 1.0kb upstream 1.0kb upstream 6269 true Chr02: 33368039-33374307 Phaseolus vulgaris
Phvul.002G175500 1.0kb upstream 1.0kb upstream 1000 false Chr02: 33368039-33369038 Phaseolus vulgaris
Phvul.002G175500 1.0kb downstream 1.0kb downstream 6269 true Chr02: 33369039-33375307 Phaseolus vulgaris
Phvul.002G175500 1.0kb downstream 1.0kb downstream 1000 false Chr02: 33374308-33375307 Phaseolus vulgaris
Phvul.002G175500 2.0kb upstream 2.0kb upstream 7269 true Chr02: 33367039-33374307 Phaseolus vulgaris
Phvul.002G175500 2.0kb upstream 2.0kb upstream 2000 false Chr02: 33367039-33369038 Phaseolus vulgaris
Phvul.002G175500 2.0kb downstream 2.0kb downstream 7269 true Chr02: 33369039-33376307 Phaseolus vulgaris
Phvul.002G175500 2.0kb downstream 2.0kb downstream 2000 false Chr02: 33374308-33376307 Phaseolus vulgaris
Phvul.002G175500 5.0kb upstream 5.0kb upstream 10269 true Chr02: 33364039-33374307 Phaseolus vulgaris
Phvul.002G175500 5.0kb upstream 5.0kb upstream 5000 false Chr02: 33364039-33369038 Phaseolus vulgaris
Phvul.002G175500 5.0kb downstream 5.0kb downstream 10269 true Chr02: 33369039-33379307 Phaseolus vulgaris
Phvul.002G175500 5.0kb downstream 5.0kb downstream 5000 false Chr02: 33374308-33379307 Phaseolus vulgaris
Phvul.002G175500 10.0kb upstream 10.0kb upstream 15269 true Chr02: 33359039-33374307 Phaseolus vulgaris
Phvul.002G175500 10.0kb upstream 10.0kb upstream 10000 false Chr02: 33359039-33369038 Phaseolus vulgaris
Phvul.002G175500 10.0kb downstream 10.0kb downstream 15269 true Chr02: 33369039-33384307 Phaseolus vulgaris
Phvul.002G175500 10.0kb downstream 10.0kb downstream 10000 false Chr02: 33374308-33384307 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299758 5265 Fabidae View MSA
124068489 5270 Rosid View MSA
123750087 5271 Pentapetalae View MSA
122788853 5272 Eudicot View MSA
122051623 5273 Angiosperm View MSA
123429188 5275 Viridiplantae View MSA
121351701 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.92758 0.0 10.7144   Low
cufflinks 14.8558 0.0 38.4709   High
cufflinks 4.6487 0.0 12.5204   Low
cufflinks 12.9186 0.0 33.3945    
cufflinks 9.76331 0.0 25.3081    
cufflinks 10.7238 0.0 27.7349    
cufflinks 11.0034 0.0 28.4468    
cufflinks 9.3444 0.0 24.208    
cufflinks 13.6288 0.0 35.2591    
cufflinks 2.50843 0.0 7.15065   Low
cufflinks 10.364 0.0 26.8249    

0 Strain