Gene : Phvul.002G036500 P. vulgaris v2.1
Defline:  (1 of 46) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  364
Name:  ? Phvul.002G036500 Secondary Identifier:  ? PAC:37178507
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G036500 0.5kb upstream 0.5kb upstream 6060 true Chr02: 3566217-3572276 Phaseolus vulgaris
Phvul.002G036500 0.5kb upstream 0.5kb upstream 500 false Chr02: 3571777-3572276 Phaseolus vulgaris
Phvul.002G036500 0.5kb downstream 0.5kb downstream 6060 true Chr02: 3565717-3571776 Phaseolus vulgaris
Phvul.002G036500 0.5kb downstream 0.5kb downstream 500 false Chr02: 3565717-3566216 Phaseolus vulgaris
Phvul.002G036500 1.0kb upstream 1.0kb upstream 6560 true Chr02: 3566217-3572776 Phaseolus vulgaris
Phvul.002G036500 1.0kb upstream 1.0kb upstream 1000 false Chr02: 3571777-3572776 Phaseolus vulgaris
Phvul.002G036500 1.0kb downstream 1.0kb downstream 6560 true Chr02: 3565217-3571776 Phaseolus vulgaris
Phvul.002G036500 1.0kb downstream 1.0kb downstream 1000 false Chr02: 3565217-3566216 Phaseolus vulgaris
Phvul.002G036500 2.0kb upstream 2.0kb upstream 7560 true Chr02: 3566217-3573776 Phaseolus vulgaris
Phvul.002G036500 2.0kb upstream 2.0kb upstream 2000 false Chr02: 3571777-3573776 Phaseolus vulgaris
Phvul.002G036500 2.0kb downstream 2.0kb downstream 7560 true Chr02: 3564217-3571776 Phaseolus vulgaris
Phvul.002G036500 2.0kb downstream 2.0kb downstream 2000 false Chr02: 3564217-3566216 Phaseolus vulgaris
Phvul.002G036500 5.0kb upstream 5.0kb upstream 10560 true Chr02: 3566217-3576776 Phaseolus vulgaris
Phvul.002G036500 5.0kb upstream 5.0kb upstream 5000 false Chr02: 3571777-3576776 Phaseolus vulgaris
Phvul.002G036500 5.0kb downstream 5.0kb downstream 10560 true Chr02: 3561217-3571776 Phaseolus vulgaris
Phvul.002G036500 5.0kb downstream 5.0kb downstream 5000 false Chr02: 3561217-3566216 Phaseolus vulgaris
Phvul.002G036500 10.0kb upstream 10.0kb upstream 15560 true Chr02: 3566217-3581776 Phaseolus vulgaris
Phvul.002G036500 10.0kb upstream 10.0kb upstream 10000 false Chr02: 3571777-3581776 Phaseolus vulgaris
Phvul.002G036500 10.0kb downstream 10.0kb downstream 15560 true Chr02: 3556217-3571776 Phaseolus vulgaris
Phvul.002G036500 10.0kb downstream 10.0kb downstream 10000 false Chr02: 3556217-3566216 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305355 5265 Fabidae View MSA
124064503 5270 Rosid View MSA
123744976 5271 Pentapetalae View MSA
122788115 5272 Eudicot View MSA
122047160 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121350621 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.867556 0.0 2.6792    
cufflinks 1.9139 0.0 5.418    
cufflinks 16.6781 0.0 44.0168   High
cufflinks 0.668069 0.0 2.1466   Low
cufflinks 1.51157 0.0 4.41389    
cufflinks 13.2251 0.0 34.4717   High
cufflinks 1.52934 0.0 4.42101    
cufflinks 1.46286 0.0 4.23735    
cufflinks 1.15584 0.0 3.45769    
cufflinks 2.44844 0.0 6.78611    
cufflinks 1.27966 0.0 3.79792    

0 Strain