Gene : Phvul.002G041200 P. vulgaris v2.1
Defline:  (1 of 1) 2.5.1.87 - Ditrans,polycis-polyprenyl diphosphate synthase ((2E,6E)-farnesyl diphosphate specific) / Rer2p Z-prenyltransferase Genomic Order:  412
Name:  ? Phvul.002G041200 Secondary Identifier:  ? PAC:37174366
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-6129 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G041200 0.5kb upstream 0.5kb upstream 5082 true Chr02: 3923044-3928125 Phaseolus vulgaris
Phvul.002G041200 0.5kb upstream 0.5kb upstream 500 false Chr02: 3927626-3928125 Phaseolus vulgaris
Phvul.002G041200 0.5kb downstream 0.5kb downstream 5082 true Chr02: 3922544-3927625 Phaseolus vulgaris
Phvul.002G041200 0.5kb downstream 0.5kb downstream 500 false Chr02: 3922544-3923043 Phaseolus vulgaris
Phvul.002G041200 1.0kb upstream 1.0kb upstream 5582 true Chr02: 3923044-3928625 Phaseolus vulgaris
Phvul.002G041200 1.0kb upstream 1.0kb upstream 1000 false Chr02: 3927626-3928625 Phaseolus vulgaris
Phvul.002G041200 1.0kb downstream 1.0kb downstream 5582 true Chr02: 3922044-3927625 Phaseolus vulgaris
Phvul.002G041200 1.0kb downstream 1.0kb downstream 1000 false Chr02: 3922044-3923043 Phaseolus vulgaris
Phvul.002G041200 2.0kb upstream 2.0kb upstream 6582 true Chr02: 3923044-3929625 Phaseolus vulgaris
Phvul.002G041200 2.0kb upstream 2.0kb upstream 2000 false Chr02: 3927626-3929625 Phaseolus vulgaris
Phvul.002G041200 2.0kb downstream 2.0kb downstream 6582 true Chr02: 3921044-3927625 Phaseolus vulgaris
Phvul.002G041200 2.0kb downstream 2.0kb downstream 2000 false Chr02: 3921044-3923043 Phaseolus vulgaris
Phvul.002G041200 5.0kb upstream 5.0kb upstream 9582 true Chr02: 3923044-3932625 Phaseolus vulgaris
Phvul.002G041200 5.0kb upstream 5.0kb upstream 5000 false Chr02: 3927626-3932625 Phaseolus vulgaris
Phvul.002G041200 5.0kb downstream 5.0kb downstream 9582 true Chr02: 3918044-3927625 Phaseolus vulgaris
Phvul.002G041200 5.0kb downstream 5.0kb downstream 5000 false Chr02: 3918044-3923043 Phaseolus vulgaris
Phvul.002G041200 10.0kb upstream 10.0kb upstream 14582 true Chr02: 3923044-3937625 Phaseolus vulgaris
Phvul.002G041200 10.0kb upstream 10.0kb upstream 10000 false Chr02: 3927626-3937625 Phaseolus vulgaris
Phvul.002G041200 10.0kb downstream 10.0kb downstream 14582 true Chr02: 3913044-3927625 Phaseolus vulgaris
Phvul.002G041200 10.0kb downstream 10.0kb downstream 10000 false Chr02: 3913044-3923043 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306673 5265 Fabidae View MSA
124061993 5270 Rosid View MSA
123744162 5271 Pentapetalae View MSA
122791831 5272 Eudicot View MSA
122045568 5273 Angiosperm View MSA
121310466 5274 Embryophyte View MSA
123347940 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.2927 0.0 64.0792   High
cufflinks 6.41951 0.0 24.8058    
cufflinks 7.62244 0.0 27.4325    
cufflinks 13.2085 0.0 50.2059   High
cufflinks 7.67585 0.0 28.5095    
cufflinks 6.0287 0.0 23.5963    
cufflinks 5.67598 0.0 26.1859    
cufflinks 4.61038 0.0 19.0815   Low
cufflinks 6.57055 0.0 24.703    
cufflinks 7.54188 0.0 32.623    
cufflinks 7.26176 0.0 26.8405    

0 Strain