Gene : Solyc01g102950.2 S. lycopersicum ITAG2.4
Defline:  (1 of 1) PTHR32098:SF5 - LYCOPENE BETA/EPSILON CYCLASE PROTEIN Description:  FAD dependent oxidoreductase (AHRD V1 **-- B5VX05_SPIMA)
Genomic Order:  3346 Name:  ? Solyc01g102950.2
Secondary Identifier:  ? PAC:36140771
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum CAROTENOID-PWY Solanum lycopersicum pathologic  
Slycopersicum PWY-5943 Solanum lycopersicum pathologic  
Slycopersicum PWY-5947 Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc01g102950.2 0.5kb upstream 0.5kb upstream 7043 true SL2.50ch01: 91603223-91610265 Solanum lycopersicum
Solyc01g102950.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch01: 91603223-91603722 Solanum lycopersicum
Solyc01g102950.2 0.5kb downstream 0.5kb downstream 7043 true SL2.50ch01: 91603723-91610765 Solanum lycopersicum
Solyc01g102950.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch01: 91610266-91610765 Solanum lycopersicum
Solyc01g102950.2 1.0kb upstream 1.0kb upstream 7543 true SL2.50ch01: 91602723-91610265 Solanum lycopersicum
Solyc01g102950.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch01: 91602723-91603722 Solanum lycopersicum
Solyc01g102950.2 1.0kb downstream 1.0kb downstream 7543 true SL2.50ch01: 91603723-91611265 Solanum lycopersicum
Solyc01g102950.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch01: 91610266-91611265 Solanum lycopersicum
Solyc01g102950.2 2.0kb upstream 2.0kb upstream 8543 true SL2.50ch01: 91601723-91610265 Solanum lycopersicum
Solyc01g102950.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch01: 91601723-91603722 Solanum lycopersicum
Solyc01g102950.2 2.0kb downstream 2.0kb downstream 8543 true SL2.50ch01: 91603723-91612265 Solanum lycopersicum
Solyc01g102950.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch01: 91610266-91612265 Solanum lycopersicum
Solyc01g102950.2 5.0kb upstream 5.0kb upstream 11543 true SL2.50ch01: 91598723-91610265 Solanum lycopersicum
Solyc01g102950.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch01: 91598723-91603722 Solanum lycopersicum
Solyc01g102950.2 5.0kb downstream 5.0kb downstream 11543 true SL2.50ch01: 91603723-91615265 Solanum lycopersicum
Solyc01g102950.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch01: 91610266-91615265 Solanum lycopersicum
Solyc01g102950.2 10.0kb upstream 10.0kb upstream 16543 true SL2.50ch01: 91593723-91610265 Solanum lycopersicum
Solyc01g102950.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch01: 91593723-91603722 Solanum lycopersicum
Solyc01g102950.2 10.0kb downstream 10.0kb downstream 16543 true SL2.50ch01: 91603723-91620265 Solanum lycopersicum
Solyc01g102950.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch01: 91610266-91620265 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121472024 5263 Asterids View MSA
123739346 5271 Pentapetalae View MSA
122787287 5272 Eudicot View MSA
122042056 5273 Angiosperm View MSA
121350076 5274 Embryophyte View MSA
123425500 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain