Protein Domain : IPR017340

Type:  Family Name:  U1 small nuclear ribonucleoprotein C
Description:  This group represents U1 small nuclear ribonucleoprotein C. It is a component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA [, , ]. Short Name:  U1_snRNP-C
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0 Child Features

2 Contains

DB identifier Type Name
IPR000690 Domain Zinc finger, C2H2-type matrin
IPR013085 Domain Zinc finger, U1-C type

3 Cross Referencess

Identifier
PTHR31148
PIRSF037969
MF_03153

0 Found In

3 GO Annotations

GO Term Gene Name
GO:0000387 IPR017340
GO:0000398 IPR017340
GO:0005685 IPR017340

3 Ontology Annotations

GO Term Gene Name
GO:0000387 IPR017340
GO:0000398 IPR017340
GO:0005685 IPR017340

0 Parent Features

571 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
evm.model.supercontig_9.157 PAC:16428043 Carica papaya 206  
29647.m002039 B9S3X9 PAC:16804684 Ricinus communis 206  
Cucsa.084690.1 A0A0A0K515 PAC:16956580 Cucumis sativus 197  
orange1.1g029190m A0A067H5X2 PAC:18137672 Citrus sinensis 197  
orange1.1g029213m A0A067H5X2 PAC:18137673 Citrus sinensis 197  
AT4G03120.1 Q56XE4 PAC:19646626 Arabidopsis thaliana 207  
Thhalv10028986m V4KJJ6 PAC:20197704 Eutrema salsugineum 193  
Ciclev10022350m V4VVV4 PAC:20807438 Citrus clementina 197  
Lus10011434 PAC:23182655 Linum usitatissimum 209  
Lus10037576 PAC:23167259 Linum usitatissimum 210  
Potri.003G058400.2 B9GWP7 PAC:26999554 Populus trichocarpa 202  
Potri.003G058400.4 PAC:26999556 Populus trichocarpa 153  
Potri.003G058400.1 B9GWP7 PAC:26999553 Populus trichocarpa 202  
Potri.003G058400.3 B9GWP7 PAC:26999555 Populus trichocarpa 202  
Gorai.004G053600.1 A0A0D2QZJ8 PAC:26774404 Gossypium raimondii 199  
Gorai.007G132200.4 A0A0D2P848 PAC:26785666 Gossypium raimondii 208  
Gorai.007G132200.3 A0A0D2P848 PAC:26785665 Gossypium raimondii 208  
Gorai.007G132200.2 A0A0D2P848 PAC:26785664 Gossypium raimondii 208  
Gorai.007G132200.9 A0A0D2TE30 PAC:26785672 Gossypium raimondii 205  
Gorai.007G132200.8 A0A0D2TE30 PAC:26785671 Gossypium raimondii 205  
Gorai.007G132200.7 A0A0D2TE30 PAC:26785670 Gossypium raimondii 205  
Gorai.007G132200.6 A0A0D2TE30 PAC:26785669 Gossypium raimondii 205  
Gorai.007G132200.1 A0A0D2P848 PAC:26785668 Gossypium raimondii 208  
Gorai.007G132200.5 A0A0D2P848 PAC:26785667 Gossypium raimondii 208  
20542 I0YJG7 PAC:27386493 Coccomyxa subellipsoidea C-169 127  
55346 C1MKH9 PAC:27342680 Micromonas pusilla CCMP1545 90  
119635 A4RSN6 PAC:27414788 Ostreococcus lucimarinus 53  
Thecc1EG043735t5 A0A061FPR8 PAC:27443406 Theobroma cacao 161  
Thecc1EG043735t2 A0A061FQ72 PAC:27443403 Theobroma cacao 195  
Thecc1EG043735t4 A0A061FQX8 PAC:27443404 Theobroma cacao 163  

3 Publications

First Author Title Year Journal Volume Pages PubMed ID
            8798632
            2136774
            1826349