Gene : Tp57577_TGAC_v2_gene10406 T. pratense v2
Defline:  (1 of 1) PTHR12741:SF12 - CALLOSE SYNTHASE 9 Genomic Order:  533
Name:  ? Tp57577_TGAC_v2_gene10406 Secondary Identifier:  ? PAC:35978346
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense PWY-6773 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene10406 0.5kb upstream 0.5kb upstream 34663 true Tp57577_TGAC_v2_LG1: 4044711-4079373 Trifolium pratense
Tp57577_TGAC_v2_gene10406 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG1: 4078874-4079373 Trifolium pratense
Tp57577_TGAC_v2_gene10406 0.5kb downstream 0.5kb downstream 34663 true Tp57577_TGAC_v2_LG1: 4044211-4078873 Trifolium pratense
Tp57577_TGAC_v2_gene10406 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG1: 4044211-4044710 Trifolium pratense
Tp57577_TGAC_v2_gene10406 1.0kb upstream 1.0kb upstream 35163 true Tp57577_TGAC_v2_LG1: 4044711-4079873 Trifolium pratense
Tp57577_TGAC_v2_gene10406 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG1: 4078874-4079873 Trifolium pratense
Tp57577_TGAC_v2_gene10406 1.0kb downstream 1.0kb downstream 35163 true Tp57577_TGAC_v2_LG1: 4043711-4078873 Trifolium pratense
Tp57577_TGAC_v2_gene10406 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG1: 4043711-4044710 Trifolium pratense
Tp57577_TGAC_v2_gene10406 2.0kb upstream 2.0kb upstream 36163 true Tp57577_TGAC_v2_LG1: 4044711-4080873 Trifolium pratense
Tp57577_TGAC_v2_gene10406 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG1: 4078874-4080873 Trifolium pratense
Tp57577_TGAC_v2_gene10406 2.0kb downstream 2.0kb downstream 36163 true Tp57577_TGAC_v2_LG1: 4042711-4078873 Trifolium pratense
Tp57577_TGAC_v2_gene10406 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG1: 4042711-4044710 Trifolium pratense
Tp57577_TGAC_v2_gene10406 5.0kb upstream 5.0kb upstream 39163 true Tp57577_TGAC_v2_LG1: 4044711-4083873 Trifolium pratense
Tp57577_TGAC_v2_gene10406 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG1: 4078874-4083873 Trifolium pratense
Tp57577_TGAC_v2_gene10406 5.0kb downstream 5.0kb downstream 39163 true Tp57577_TGAC_v2_LG1: 4039711-4078873 Trifolium pratense
Tp57577_TGAC_v2_gene10406 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG1: 4039711-4044710 Trifolium pratense
Tp57577_TGAC_v2_gene10406 10.0kb upstream 10.0kb upstream 44163 true Tp57577_TGAC_v2_LG1: 4044711-4088873 Trifolium pratense
Tp57577_TGAC_v2_gene10406 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG1: 4078874-4088873 Trifolium pratense
Tp57577_TGAC_v2_gene10406 10.0kb downstream 10.0kb downstream 44163 true Tp57577_TGAC_v2_LG1: 4034711-4078873 Trifolium pratense
Tp57577_TGAC_v2_gene10406 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG1: 4034711-4044710 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303104 5265 Fabidae View MSA
124064291 5270 Rosid View MSA
123749286 5271 Pentapetalae View MSA
122796440 5272 Eudicot View MSA
122050431 5273 Angiosperm View MSA
121349066 5274 Embryophyte View MSA
123428420 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain