Protein Domain : IPR017856

Type:  Domain Name:  Integrase, N-terminal zinc-binding domain-like
Description:  This entry represents a structural domain with an alpha-helical, orthogonal bundle fold. Domains with this structure are found at the N-terminal (zinc-binding domain) of HIV integrase, and in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori(Campylobacter pylori) and aq1575 from Aquifex aeolicus[].Retroviral integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains: an N-terminal zinc binding domain, a central catalytic core and a C-terminal DNA-binding domain [, ]. It is often found as part of the POL polyprotein. Short Name:  Integrase_Zn-bd_dom-like_N

1 Child Features

DB identifier Type Name
IPR003308 Domain Integrase, N-terminal zinc-binding domain

0 Contains

1 Cross References

Identifier
G3DSA:1.10.10.200

1 Found In

DB identifier Type Name
IPR002876 Family Transcriptional regulator TACO1-like

0 GO Annotation

0 Ontology Annotations

0 Parent Features

441 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
evm.model.supercontig_66.124 PAC:16424569 Carica papaya 99  
evm.model.supercontig_80.112 PAC:16426713 Carica papaya 482  
Cucsa.357460.1 PAC:16980413 Cucumis sativus 748  
orange1.1g039283m A0A067D9L1 PAC:18123958 Citrus sinensis 600  
orange1.1g016013m A0A067H8P6 PAC:18091563 Citrus sinensis 397  
orange1.1g012915m A0A067GWH7 PAC:18091562 Citrus sinensis 453  
orange1.1g016011m A0A067H8P6 PAC:18091564 Citrus sinensis 397  
orange1.1g004593m PAC:18091529 Citrus sinensis 743  
Ciclev10001391m V4TDZ8 PAC:20786235 Citrus clementina 397  
Ciclev10000376m PAC:20786396 Citrus clementina 758  
Ciclev10000380m PAC:20786397 Citrus clementina 754  
Potri.018G092300.2 PAC:27011394 Populus trichocarpa 156  
Potri.018G092300.1 B9ILY8 PAC:27011393 Populus trichocarpa 175  
Gorai.009G241300.1 A0A0D2TUM3 PAC:26769058 Gossypium raimondii 445  
Gorai.006G053100.2 A0A0D2NM58 PAC:26830863 Gossypium raimondii 1184  
Gorai.006G053100.1 A0A0D2Q3P3 PAC:26830862 Gossypium raimondii 1352  
Gorai.006G053100.4 A0A0D2SSE1 PAC:26830865 Gossypium raimondii 964  
Gorai.006G053100.3 A0A0D2RXI1 PAC:26830864 Gossypium raimondii 1134  
Glyma.06G253400.1.p A0A0R0JLK7 PAC:30551134 Glycine max 105  
Glyma.18G188600.1.p I1N2N2 PAC:30557692 Glycine max 105  
Medtr2g044870.1 A2Q3Z4 PAC:31064528 Medicago truncatula 91  
Spipo4G0017800 PAC:31503882 Spirodela polyrhiza 382  
Traes_1AL_1A07CFC2B.5 PAC:31959238 Triticum aestivum 62  
Traes_1AL_1A07CFC2B.2 PAC:31959235 Triticum aestivum 213  
Traes_1BL_113D25C4F.5 PAC:31763850 Triticum aestivum 151  
Traes_1DL_E8A013599.6 PAC:31974898 Triticum aestivum 101  
Traes_5AS_4FF97BD54.1 PAC:31941973 Triticum aestivum 90  
Traes_6AL_7088F2DCE.6 PAC:32001987 Triticum aestivum 184  
Traes_6DL_2EC7FE762.3 PAC:31926466 Triticum aestivum 184  
Traes_6DL_2EC7FE762.5 PAC:31926468 Triticum aestivum 122  

3 Publications

First Author Title Year Journal Volume Pages PubMed ID
            11101216
            11743009
            12060744