Gene : AL4G39980 A. lyrata v2.1

Defline:  (1 of 1) PTHR22912:SF48 - NADPH-DEPENDENT THIOREDOXIN REDUCTASE 3 Genomic Order:  2679
Name:  ? AL4G39980 Secondary Identifier:  ? PAC:35921996

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata THIOREDOX-PWY Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL4G39980 0.5kb upstream 0.5kb upstream 3391   true scaffold_4: 20380065-20383455 Arabidopsis lyrata
AL4G39980 0.5kb upstream 0.5kb upstream 500   false scaffold_4: 20382956-20383455 Arabidopsis lyrata
AL4G39980 0.5kb downstream 0.5kb downstream 3391   true scaffold_4: 20379565-20382955 Arabidopsis lyrata
AL4G39980 0.5kb downstream 0.5kb downstream 500   false scaffold_4: 20379565-20380064 Arabidopsis lyrata
AL4G39980 1.0kb upstream 1.0kb upstream 3891   true scaffold_4: 20380065-20383955 Arabidopsis lyrata
AL4G39980 1.0kb upstream 1.0kb upstream 1000   false scaffold_4: 20382956-20383955 Arabidopsis lyrata
AL4G39980 1.0kb downstream 1.0kb downstream 3891   true scaffold_4: 20379065-20382955 Arabidopsis lyrata
AL4G39980 1.0kb downstream 1.0kb downstream 1000   false scaffold_4: 20379065-20380064 Arabidopsis lyrata
AL4G39980 2.0kb upstream 2.0kb upstream 4891   true scaffold_4: 20380065-20384955 Arabidopsis lyrata
AL4G39980 2.0kb upstream 2.0kb upstream 2000   false scaffold_4: 20382956-20384955 Arabidopsis lyrata
AL4G39980 2.0kb downstream 2.0kb downstream 4891   true scaffold_4: 20378065-20382955 Arabidopsis lyrata
AL4G39980 2.0kb downstream 2.0kb downstream 2000   false scaffold_4: 20378065-20380064 Arabidopsis lyrata
AL4G39980 5.0kb upstream 5.0kb upstream 7891   true scaffold_4: 20380065-20387955 Arabidopsis lyrata
AL4G39980 5.0kb upstream 5.0kb upstream 5000   false scaffold_4: 20382956-20387955 Arabidopsis lyrata
AL4G39980 5.0kb downstream 5.0kb downstream 7891   true scaffold_4: 20375065-20382955 Arabidopsis lyrata
AL4G39980 5.0kb downstream 5.0kb downstream 5000   false scaffold_4: 20375065-20380064 Arabidopsis lyrata
AL4G39980 10.0kb upstream 10.0kb upstream 12891   true scaffold_4: 20380065-20392955 Arabidopsis lyrata
AL4G39980 10.0kb upstream 10.0kb upstream 10000   false scaffold_4: 20382956-20392955 Arabidopsis lyrata
AL4G39980 10.0kb downstream 10.0kb downstream 12891   true scaffold_4: 20370065-20382955 Arabidopsis lyrata
AL4G39980 10.0kb downstream 10.0kb downstream 10000   false scaffold_4: 20370065-20380064 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375618 5261 Brassicaceae View MSA
123830381 5264 Brassicales-Malvales View MSA
124340337 5266 SBM View MSA
124243162 5268 Malvidae View MSA
124063608 5270 Rosid View MSA
123745502 5271 Pentapetalae View MSA
122789428 5272 Eudicot View MSA
122046832 5273 Angiosperm View MSA
121345870 5274 Embryophyte View MSA
123426423 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain