Gene : AL1G65240 A. lyrata v2.1

Defline:  (1 of 1) PTHR30373:SF2 - UPF0603 PROTEIN YGCG Genomic Order:  5055
Name:  ? AL1G65240 Secondary Identifier:  ? PAC:35932436

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-5083 Arabidopsis lyrata pathologic  
Alyrata PWY-6348 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL1G65240 0.5kb upstream 0.5kb upstream 2177   true scaffold_1: 31095077-31097253 Arabidopsis lyrata
AL1G65240 0.5kb upstream 0.5kb upstream 500   false scaffold_1: 31095077-31095576 Arabidopsis lyrata
AL1G65240 0.5kb downstream 0.5kb downstream 2177   true scaffold_1: 31095577-31097753 Arabidopsis lyrata
AL1G65240 0.5kb downstream 0.5kb downstream 500   false scaffold_1: 31097254-31097753 Arabidopsis lyrata
AL1G65240 1.0kb upstream 1.0kb upstream 2677   true scaffold_1: 31094577-31097253 Arabidopsis lyrata
AL1G65240 1.0kb upstream 1.0kb upstream 1000   false scaffold_1: 31094577-31095576 Arabidopsis lyrata
AL1G65240 1.0kb downstream 1.0kb downstream 2677   true scaffold_1: 31095577-31098253 Arabidopsis lyrata
AL1G65240 1.0kb downstream 1.0kb downstream 1000   false scaffold_1: 31097254-31098253 Arabidopsis lyrata
AL1G65240 2.0kb upstream 2.0kb upstream 3677   true scaffold_1: 31093577-31097253 Arabidopsis lyrata
AL1G65240 2.0kb upstream 2.0kb upstream 2000   false scaffold_1: 31093577-31095576 Arabidopsis lyrata
AL1G65240 2.0kb downstream 2.0kb downstream 3677   true scaffold_1: 31095577-31099253 Arabidopsis lyrata
AL1G65240 2.0kb downstream 2.0kb downstream 2000   false scaffold_1: 31097254-31099253 Arabidopsis lyrata
AL1G65240 5.0kb upstream 5.0kb upstream 6677   true scaffold_1: 31090577-31097253 Arabidopsis lyrata
AL1G65240 5.0kb upstream 5.0kb upstream 5000   false scaffold_1: 31090577-31095576 Arabidopsis lyrata
AL1G65240 5.0kb downstream 5.0kb downstream 6677   true scaffold_1: 31095577-31102253 Arabidopsis lyrata
AL1G65240 5.0kb downstream 5.0kb downstream 5000   false scaffold_1: 31097254-31102253 Arabidopsis lyrata
AL1G65240 10.0kb upstream 10.0kb upstream 11677   true scaffold_1: 31085577-31097253 Arabidopsis lyrata
AL1G65240 10.0kb upstream 10.0kb upstream 10000   false scaffold_1: 31085577-31095576 Arabidopsis lyrata
AL1G65240 10.0kb downstream 10.0kb downstream 11677   true scaffold_1: 31095577-31107253 Arabidopsis lyrata
AL1G65240 10.0kb downstream 10.0kb downstream 10000   false scaffold_1: 31097254-31107253 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362877 5261 Brassicaceae View MSA
123830968 5264 Brassicales-Malvales View MSA
124342350 5266 SBM View MSA
124243217 5268 Malvidae View MSA
124061871 5270 Rosid View MSA
123737495 5271 Pentapetalae View MSA
122787639 5272 Eudicot View MSA
122046154 5273 Angiosperm View MSA
121349050 5274 Embryophyte View MSA
123424307 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain