Gene : AL1G57820 A. lyrata v2.1

Defline:  (1 of 2) K01872 - alanyl-tRNA synthetase (AARS, alaS) Genomic Order:  4390
Name:  ? AL1G57820 Secondary Identifier:  ? PAC:35931576

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata TRNA-CHARGING-PWY Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL1G57820 0.5kb upstream 0.5kb upstream 7683   true scaffold_1: 26161316-26168998 Arabidopsis lyrata
AL1G57820 0.5kb upstream 0.5kb upstream 500   false scaffold_1: 26168499-26168998 Arabidopsis lyrata
AL1G57820 0.5kb downstream 0.5kb downstream 7683   true scaffold_1: 26160816-26168498 Arabidopsis lyrata
AL1G57820 0.5kb downstream 0.5kb downstream 500   false scaffold_1: 26160816-26161315 Arabidopsis lyrata
AL1G57820 1.0kb upstream 1.0kb upstream 8183   true scaffold_1: 26161316-26169498 Arabidopsis lyrata
AL1G57820 1.0kb upstream 1.0kb upstream 1000   false scaffold_1: 26168499-26169498 Arabidopsis lyrata
AL1G57820 1.0kb downstream 1.0kb downstream 8183   true scaffold_1: 26160316-26168498 Arabidopsis lyrata
AL1G57820 1.0kb downstream 1.0kb downstream 1000   false scaffold_1: 26160316-26161315 Arabidopsis lyrata
AL1G57820 2.0kb upstream 2.0kb upstream 9183   true scaffold_1: 26161316-26170498 Arabidopsis lyrata
AL1G57820 2.0kb upstream 2.0kb upstream 2000   false scaffold_1: 26168499-26170498 Arabidopsis lyrata
AL1G57820 2.0kb downstream 2.0kb downstream 9183   true scaffold_1: 26159316-26168498 Arabidopsis lyrata
AL1G57820 2.0kb downstream 2.0kb downstream 2000   false scaffold_1: 26159316-26161315 Arabidopsis lyrata
AL1G57820 5.0kb upstream 5.0kb upstream 12183   true scaffold_1: 26161316-26173498 Arabidopsis lyrata
AL1G57820 5.0kb upstream 5.0kb upstream 5000   false scaffold_1: 26168499-26173498 Arabidopsis lyrata
AL1G57820 5.0kb downstream 5.0kb downstream 12183   true scaffold_1: 26156316-26168498 Arabidopsis lyrata
AL1G57820 5.0kb downstream 5.0kb downstream 5000   false scaffold_1: 26156316-26161315 Arabidopsis lyrata
AL1G57820 10.0kb upstream 10.0kb upstream 17183   true scaffold_1: 26161316-26178498 Arabidopsis lyrata
AL1G57820 10.0kb upstream 10.0kb upstream 10000   false scaffold_1: 26168499-26178498 Arabidopsis lyrata
AL1G57820 10.0kb downstream 10.0kb downstream 17183   true scaffold_1: 26151316-26168498 Arabidopsis lyrata
AL1G57820 10.0kb downstream 10.0kb downstream 10000   false scaffold_1: 26151316-26161315 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364421 5261 Brassicaceae View MSA
123830021 5264 Brassicales-Malvales View MSA
124341952 5266 SBM View MSA
124240298 5268 Malvidae View MSA
124063784 5270 Rosid View MSA
123740226 5271 Pentapetalae View MSA
122791486 5272 Eudicot View MSA
122047019 5273 Angiosperm View MSA
121346985 5274 Embryophyte View MSA
123424131 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain