Protein Domain : IPR000817

Type:  Family Name:  Prion protein
Description:  Prion protein (PrP-c) [, , ] is a small glycoprotein found in high quantity in the brain of animals infected with certain degenerative neurological diseases, such as sheep scrapie and bovine spongiform encephalopathy (BSE), and the human dementias Creutzfeldt-Jacob disease (CJD) and Gerstmann-Straussler syndrome (GSS). PrP-c is encoded in the host genome and is expressed both in normal and infected cells. During infection, however, the PrP-c molecule become altered (conformationally rather than at the amino acid level) to an abnormal isoform, PrP-sc. In detergent-treated brain extracts from infected individuals, fibrils composed of polymers of PrP-sc, namely scrapie-associated fibrils or prion rods, can be evidenced by electron microscopy. The precise function of the normal PrP isoform in healthy individuals remains unknown. Several results, mainly obtained in transgenic animals, indicate that PrP-cmight play a role in long-term potentiation, in sleep physiology, in oxidative burst compensation (PrP can fix four Cu2+ through its octarepeat domain), in interactions with the extracellular matrix (PrP-c can bind to the precursor of the laminin receptor, LRP), in apoptosis and in signal transduction (costimulation ofPrP-c induces a modulation of Fyn kinase phosphorylation) [].The normal isoform, PrP-c, is anchored at the cell membrane, in rafts, through a glycosyl phosphatidyl inositol (GPI); its half-life at the cell surface is 5 h, after which the protein is internalised through a caveolae-dependent mechanism and degraded in the endolysosome compartment. Conversion between PrP-c and PrP-scoccurs likely during the internalisation process. In humans, PrP is a 253 amino acid protein, which has a molecular weight of 35-36 kDa. It has two hexapeptides and repeated octapeptides at the N terminus, a disulphide bond and is associated at the C terminus with a GPI, which enables it to anchor to the external part of thecell membrane. The secondary structure of PrP-c is mainly composed of alpha-helices, whereas PrP-sc is mainly beta-sheets: transconformation of alpha-helices into beta-sheets has been proposed as the structural basis by which PrP acquires pathogenicity in TSEs. The three-dimensional structures shows the protein to be made of a globular domain which includes three alpha-helices and two small antiparallel beta-sheetstructures, and a long flexible tail whose conformation depends on the biophysical parameters of the environment. Crystals of the globular domain of PrP have recently been obtained; their analysis suggests a possible dimerisation of the protein through the three-dimensional swapping of the C-terminal helix 3 andrearrangement of the disulphide bond. Short Name:  Prion

0 Child Features

2 Contains

DB identifier Type Name
IPR022416 Domain Prion/Doppel protein, beta-ribbon domain
IPR020949 Repeat Prion, copper binding octapeptide repeat

3 Cross Referencess

Identifier
PTHR11522
PR00341
SM00157

0 Found In

2 GO Annotations

GO Term Gene Name
GO:0051260 IPR000817
GO:0016020 IPR000817

2 Ontology Annotations

GO Term Gene Name
GO:0051260 IPR000817
GO:0016020 IPR000817

0 Parent Features

3256 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
evm.model.supercontig_227.10 PAC:16414075 Carica papaya 283  
evm.model.supercontig_37.170 PAC:16418626 Carica papaya 208  
evm.model.supercontig_59.126 PAC:16423134 Carica papaya 180  
evm.model.supercontig_706.1 PAC:16425406 Carica papaya 215  
evm.model.supercontig_87.92 PAC:16427765 Carica papaya 314  
evm.model.supercontig_9.51 PAC:16428317 Carica papaya 126  
30010.m000662 B9SFQ6 PAC:16815632 Ricinus communis 313  
30064.m000497 B9SVA0 PAC:16816428 Ricinus communis 165  
Cucsa.321870.1 PAC:16977582 Cucumis sativus 183  
Cucsa.383470.1 PAC:16982374 Cucumis sativus 148  
Cucsa.085710.1 PAC:16956687 Cucumis sativus 99  
Cucsa.148600.1 PAC:16964172 Cucumis sativus 207  
Cucsa.381750.1 A0A0A0K4M5 PAC:16982241 Cucumis sativus 212  
orange1.1g031044m A0A067ETT2 PAC:18127977 Citrus sinensis 167  
AT5G46730.1 Q7Y218 PAC:19671665 Arabidopsis thaliana 290  
AT2G05580.1 Q9SL09 PAC:19643158 Arabidopsis thaliana 302  
AT2G36120.1 Q9SIH2 PAC:19640574 Arabidopsis thaliana 255  
Ciclev10006097m V4S7E3 PAC:20792499 Citrus clementina 161  
Lus10017852 PAC:23148844 Linum usitatissimum 244  
Lus10028888 PAC:23177240 Linum usitatissimum 357  
Lus10015131 PAC:23149579 Linum usitatissimum 454  
Potri.001G021200.1 A0A2K2BR51 PAC:27042483 Populus trichocarpa 156  
Potri.001G021300.1 A0A2K2BR58 PAC:27047552 Populus trichocarpa 154  
Potri.001G141800.1 PAC:27046589 Populus trichocarpa 215  
Potri.004G172600.1 B9H173 PAC:26990347 Populus trichocarpa 207  
Potri.005G038300.1 A0A2K2AB73 PAC:27030838 Populus trichocarpa 557  
Potri.008G104900.1 A0A2K1ZF21 PAC:27038390 Populus trichocarpa 205  
Potri.019G038500.1 A0A2K1WP59 PAC:27026898 Populus trichocarpa 216  
Gorai.003G182600.1 A0A0D2P3D1 PAC:26797851 Gossypium raimondii 239  
Gorai.003G182800.1 A0A0D2RPR1 PAC:26797623 Gossypium raimondii 371  

4 Publications

First Author Title Year Journal Volume Pages PubMed ID
            2572197
            1916104
            2908696
            12354606