Gene : Potri.015G028200 P. trichocarpa v3.0
Defline:  (1 of 3) K01899 - succinyl-CoA synthetase alpha subunit (LSC1) Genomic Order:  282
Name:  ? Potri.015G028200 Secondary Identifier:  ? PAC:27019284
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa PWY-5464 Populus trichocarpa pathologic  
Ptrichocarpa PWY-5690 Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.015G028200 0.5kb upstream 0.5kb upstream 5088 true Chr15: 2261698-2266785 Populus trichocarpa
Potri.015G028200 0.5kb upstream 0.5kb upstream 500 false Chr15: 2261698-2262197 Populus trichocarpa
Potri.015G028200 0.5kb downstream 0.5kb downstream 5088 true Chr15: 2262198-2267285 Populus trichocarpa
Potri.015G028200 0.5kb downstream 0.5kb downstream 500 false Chr15: 2266786-2267285 Populus trichocarpa
Potri.015G028200 1.0kb upstream 1.0kb upstream 5588 true Chr15: 2261198-2266785 Populus trichocarpa
Potri.015G028200 1.0kb upstream 1.0kb upstream 1000 false Chr15: 2261198-2262197 Populus trichocarpa
Potri.015G028200 1.0kb downstream 1.0kb downstream 5588 true Chr15: 2262198-2267785 Populus trichocarpa
Potri.015G028200 1.0kb downstream 1.0kb downstream 1000 false Chr15: 2266786-2267785 Populus trichocarpa
Potri.015G028200 2.0kb upstream 2.0kb upstream 6588 true Chr15: 2260198-2266785 Populus trichocarpa
Potri.015G028200 2.0kb upstream 2.0kb upstream 2000 false Chr15: 2260198-2262197 Populus trichocarpa
Potri.015G028200 2.0kb downstream 2.0kb downstream 6588 true Chr15: 2262198-2268785 Populus trichocarpa
Potri.015G028200 2.0kb downstream 2.0kb downstream 2000 false Chr15: 2266786-2268785 Populus trichocarpa
Potri.015G028200 5.0kb upstream 5.0kb upstream 9588 true Chr15: 2257198-2266785 Populus trichocarpa
Potri.015G028200 5.0kb upstream 5.0kb upstream 5000 false Chr15: 2257198-2262197 Populus trichocarpa
Potri.015G028200 5.0kb downstream 5.0kb downstream 9588 true Chr15: 2262198-2271785 Populus trichocarpa
Potri.015G028200 5.0kb downstream 5.0kb downstream 5000 false Chr15: 2266786-2271785 Populus trichocarpa
Potri.015G028200 10.0kb upstream 10.0kb upstream 14588 true Chr15: 2252198-2266785 Populus trichocarpa
Potri.015G028200 10.0kb upstream 10.0kb upstream 10000 false Chr15: 2252198-2262197 Populus trichocarpa
Potri.015G028200 10.0kb downstream 10.0kb downstream 14588 true Chr15: 2262198-2276785 Populus trichocarpa
Potri.015G028200 10.0kb downstream 10.0kb downstream 10000 false Chr15: 2266786-2276785 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.084     High High
cufflinks 2.266       Low
cufflinks 4.987        
cufflinks 2.406       Low
cufflinks 8.917     High High
cufflinks 4.986        
cufflinks 3.214        
cufflinks 4.032        
cufflinks 3.259        
cufflinks 2.996        
cufflinks 6.03       High
cufflinks 2.372       Low
cufflinks 4.083        
cufflinks 2.379       Low
cufflinks 2.276       Low
cufflinks 2.556        
cufflinks 3.298        
cufflinks 4.541        
cufflinks 2.869        
cufflinks 5.578        
cufflinks 8.929     High High
cufflinks 2.647        
cufflinks 3.865        
cufflinks 4.155        
cufflinks 16.049        
cufflinks 10.957       Low
cufflinks 15.417        
cufflinks 15.573        
cufflinks 20.75       High
cufflinks 12.219       Low

0 Strain