Gene : Lus10015143.g L. usitatissimum v1.0
Defline:  (1 of 3) PTHR32098:SF5 - LYCOPENE BETA/EPSILON CYCLASE PROTEIN Genomic Order:  53
Name:  ? Lus10015143.g Secondary Identifier:  ? PAC:23149499
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lusitatissimum CAROTENOID-PWY Linum usitatissimum pathologic  
Lusitatissimum PWY-5943 Linum usitatissimum pathologic  
Lusitatissimum PWY-5947 Linum usitatissimum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lus10015143.g 0.5kb upstream 0.5kb upstream 2312 true scaffold866: 231919-234230 Linum usitatissimum
Lus10015143.g 0.5kb upstream 0.5kb upstream 500 false scaffold866: 233731-234230 Linum usitatissimum
Lus10015143.g 0.5kb downstream 0.5kb downstream 2312 true scaffold866: 231419-233730 Linum usitatissimum
Lus10015143.g 0.5kb downstream 0.5kb downstream 500 false scaffold866: 231419-231918 Linum usitatissimum
Lus10015143.g 1.0kb upstream 1.0kb upstream 2812 true scaffold866: 231919-234730 Linum usitatissimum
Lus10015143.g 1.0kb upstream 1.0kb upstream 1000 false scaffold866: 233731-234730 Linum usitatissimum
Lus10015143.g 1.0kb downstream 1.0kb downstream 2812 true scaffold866: 230919-233730 Linum usitatissimum
Lus10015143.g 1.0kb downstream 1.0kb downstream 1000 false scaffold866: 230919-231918 Linum usitatissimum
Lus10015143.g 2.0kb upstream 2.0kb upstream 3812 true scaffold866: 231919-235730 Linum usitatissimum
Lus10015143.g 2.0kb upstream 2.0kb upstream 2000 false scaffold866: 233731-235730 Linum usitatissimum
Lus10015143.g 2.0kb downstream 2.0kb downstream 3812 true scaffold866: 229919-233730 Linum usitatissimum
Lus10015143.g 2.0kb downstream 2.0kb downstream 2000 false scaffold866: 229919-231918 Linum usitatissimum
Lus10015143.g 5.0kb upstream 5.0kb upstream 6812 true scaffold866: 231919-238730 Linum usitatissimum
Lus10015143.g 5.0kb upstream 5.0kb upstream 5000 false scaffold866: 233731-238730 Linum usitatissimum
Lus10015143.g 5.0kb downstream 5.0kb downstream 6812 true scaffold866: 226919-233730 Linum usitatissimum
Lus10015143.g 5.0kb downstream 5.0kb downstream 5000 false scaffold866: 226919-231918 Linum usitatissimum
Lus10015143.g 10.0kb upstream 10.0kb upstream 11812 true scaffold866: 231919-243730 Linum usitatissimum
Lus10015143.g 10.0kb upstream 10.0kb upstream 10000 false scaffold866: 233731-243730 Linum usitatissimum
Lus10015143.g 10.0kb downstream 10.0kb downstream 11812 true scaffold866: 221919-233730 Linum usitatissimum
Lus10015143.g 10.0kb downstream 10.0kb downstream 10000 false scaffold866: 221919-231918 Linum usitatissimum

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122457322 5262 Malpighiales View MSA
124238742 5268 Malvidae View MSA
124061081 5270 Rosid View MSA
123739346 5271 Pentapetalae View MSA
122787287 5272 Eudicot View MSA
122042056 5273 Angiosperm View MSA
121350076 5274 Embryophyte View MSA
123425500 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain