Gene : Potri.T143500 P. trichocarpa

Defline:  (1 of 11) K00026 - malate dehydrogenase (MDH2) Name:  ? Potri.T143500
Secondary Identifier:  ? PAC:26993255

Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Pathway name Organism Name Analysis Method Analysis Status
Ptrichocarpa GLUCONEO-PWY gluconeogenesis I Populus trichocarpa pathologic  
Ptrichocarpa PWY66-399 gluconeogenesis III Populus trichocarpa pathologic  
Ptrichocarpa PWY-7115 C4 photosynthetic carbon assimilation cycle, NAD-ME type Populus trichocarpa pathologic  
Ptrichocarpa PWY-5464 superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle Populus trichocarpa pathologic  
Ptrichocarpa PWY-561 superpathway of glyoxylate cycle and fatty acid degradation Populus trichocarpa pathologic  
Ptrichocarpa GLYOXYLATE-BYPASS glyoxylate cycle Populus trichocarpa pathologic  
Ptrichocarpa PWY-5690 TCA cycle II (plants and fungi) Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

4 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.T143500 5.0kb upstream 5.0kb upstream 6131   true scaffold_394: 1-6131 Populus trichocarpa
Potri.T143500 5.0kb upstream 5.0kb upstream 4047   false scaffold_394: 1-4047 Populus trichocarpa
Potri.T143500 5.0kb downstream 5.0kb downstream 7084   true scaffold_394: 4048-11131 Populus trichocarpa
Potri.T143500 5.0kb downstream 5.0kb downstream 5000   false scaffold_394: 6132-11131 Populus trichocarpa

158 Homologs


Gene . Primary Identifier

Ortholog _ Organism . Short Name

Ortholog _ Gene . Primary Identifier
Potri.T143500 R. communis 29900.t000052
Potri.T143500 P. trichocarpa Potri.004G054200
Potri.T143500 V. vinifera GSVIVG01014231001
Potri.T143500 P. trichocarpa Potri.004G054200
Potri.T143500 C. subellipsoidea C-169 estExt_Genewise1.C_40150
Potri.T143500 P. trichocarpa Potri.001G376500
Potri.T143500 P. trichocarpa Potri.004G054200
Potri.T143500 P. trichocarpa Potri.011G096300
Potri.T143500 M. pusilla CCMP1545 fgenesh3_kg.11_#_29_#_isotig01016
Potri.T143500 P. trichocarpa Potri.001G376500
Potri.T143500 P. trichocarpa Potri.004G054200
Potri.T143500 P. trichocarpa Potri.011G096300
Potri.T143500 M. sp. RCC299 fgenesh2_kg.C_Chr_08000007
Potri.T143500 P. trichocarpa Potri.001G376500
Potri.T143500 P. trichocarpa Potri.004G054200
Potri.T143500 P. trichocarpa Potri.011G096300
Potri.T143500 P. trichocarpa estExt_fgenesh1_pg.C_Chr_60162
Potri.T143500 O. lucimarinus Potri.001G376500
Potri.T143500 O. lucimarinus Potri.004G054200
Potri.T143500 O. lucimarinus Potri.011G096300
Potri.T143500 C. reinhardtii Cre12.g483950
Potri.T143500 P. trichocarpa Potri.001G376500
Potri.T143500 P. trichocarpa Potri.004G054200
Potri.T143500 P. trichocarpa Potri.011G096300
Potri.T143500 Z. mays GRMZM2G466833
Potri.T143500 P. trichocarpa Potri.004G054200
Potri.T143500 M. polymorpha Mapoly0134s0005
Potri.T143500 P. trichocarpa Potri.001G376500
Potri.T143500 P. trichocarpa Potri.004G054200
Potri.T143500 P. trichocarpa Potri.011G096300

40 Rna Seq Expressionss

Countvariance Method Conflo Count Status Countdispersionvar Library Expression Level Abundance Confhi Locus Expression Level Countuncertaintyvar
  cufflinks   2.504 OK   Low 0.051   Low  
  cufflinks   74.066 OK     1.428      
  cufflinks   17.256 OK     0.396      
  cufflinks   82.395 OK     1.519   High  
  cufflinks   4.665 OK   Low 0.114   Low  
  cufflinks   57.832 OK     1.037      
  cufflinks   48.662 OK     0.952      
  cufflinks   42.449 OK     1.103      
  cufflinks   8.698 OK     0.181      
  cufflinks   17.001 OK     0.447      
  cufflinks   57.626 OK     1.328      
  cufflinks   18.455 OK     0.471      
  cufflinks   4.264 OK   Low 0.077   Low  
  cufflinks   3.366 OK   Low 0.077   Low  
  cufflinks   61.041 OK     1.116      
  cufflinks   42.613 OK     1.039      
  cufflinks   22.16 OK     0.472      
  cufflinks   53.751 OK     1.143      
  cufflinks   9.702 OK     0.201      
  cufflinks   70.453 OK     1.81   High  
  cufflinks   16.05 OK     0.328      
  cufflinks   31.683 OK     0.817      
  cufflinks   72.366 OK     1.713   High  
  cufflinks   22.935 OK     0.508      
  cufflinks     OK   Low 0.044      
  cufflinks     OK   Not Expressed 0.0   Not Expressed  
  cufflinks     OK   Not Expressed 0.0   Not Expressed  
  cufflinks     OK   Low 0.093      
  cufflinks     OK   Low 0.162   High  
  cufflinks     OK   Not Expressed 0.0   Not Expressed