Gene : Potri.004G054200 P. trichocarpa

Defline:  (1 of 11) K00026 - malate dehydrogenase (MDH2) Name:  ? Potri.004G054200
Secondary Identifier:  ? PAC:26991967

Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Pathway name Organism Name Analysis Method Analysis Status
Ptrichocarpa GLUCONEO-PWY gluconeogenesis I Populus trichocarpa pathologic  
Ptrichocarpa PWY66-399 gluconeogenesis III Populus trichocarpa pathologic  
Ptrichocarpa PWY-7115 C4 photosynthetic carbon assimilation cycle, NAD-ME type Populus trichocarpa pathologic  
Ptrichocarpa PWY-5464 superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle Populus trichocarpa pathologic  
Ptrichocarpa PWY-561 superpathway of glyoxylate cycle and fatty acid degradation Populus trichocarpa pathologic  
Ptrichocarpa GLYOXYLATE-BYPASS glyoxylate cycle Populus trichocarpa pathologic  
Ptrichocarpa PWY-5690 TCA cycle II (plants and fungi) Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

4 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.004G054200 5.0kb upstream 5.0kb upstream 7065   true Chr04: 4243885-4250949 Populus trichocarpa
Potri.004G054200 5.0kb upstream 5.0kb upstream 5000   false Chr04: 4243885-4248884 Populus trichocarpa
Potri.004G054200 5.0kb downstream 5.0kb downstream 7065   true Chr04: 4248885-4255949 Populus trichocarpa
Potri.004G054200 5.0kb downstream 5.0kb downstream 5000   false Chr04: 4250950-4255949 Populus trichocarpa

158 Homologs


Gene . Primary Identifier

Ortholog _ Organism . Short Name

Ortholog _ Gene . Primary Identifier
Potri.004G054200 R. communis 29900.t000052
Potri.004G054200 P. trichocarpa Potri.T143500
Potri.004G054200 V. vinifera GSVIVG01014231001
Potri.004G054200 P. trichocarpa Potri.T143500
Potri.004G054200 C. subellipsoidea C-169 estExt_Genewise1.C_40150
Potri.004G054200 P. trichocarpa Potri.T143500
Potri.004G054200 P. trichocarpa Potri.001G376500
Potri.004G054200 P. trichocarpa Potri.011G096300
Potri.004G054200 M. pusilla CCMP1545 fgenesh3_kg.11_#_29_#_isotig01016
Potri.004G054200 P. trichocarpa Potri.T143500
Potri.004G054200 P. trichocarpa Potri.001G376500
Potri.004G054200 P. trichocarpa Potri.011G096300
Potri.004G054200 M. sp. RCC299 fgenesh2_kg.C_Chr_08000007
Potri.004G054200 P. trichocarpa Potri.T143500
Potri.004G054200 P. trichocarpa Potri.001G376500
Potri.004G054200 P. trichocarpa Potri.011G096300
Potri.004G054200 P. trichocarpa estExt_fgenesh1_pg.C_Chr_60162
Potri.004G054200 O. lucimarinus Potri.T143500
Potri.004G054200 O. lucimarinus Potri.001G376500
Potri.004G054200 O. lucimarinus Potri.011G096300
Potri.004G054200 C. reinhardtii Cre12.g483950
Potri.004G054200 P. trichocarpa Potri.T143500
Potri.004G054200 P. trichocarpa Potri.001G376500
Potri.004G054200 P. trichocarpa Potri.011G096300
Potri.004G054200 Z. mays GRMZM2G466833
Potri.004G054200 P. trichocarpa Potri.T143500
Potri.004G054200 M. polymorpha Mapoly0134s0005
Potri.004G054200 P. trichocarpa Potri.T143500
Potri.004G054200 P. trichocarpa Potri.001G376500
Potri.004G054200 P. trichocarpa Potri.011G096300

40 Rna Seq Expressionss

Countvariance Method Conflo Count Status Countdispersionvar Library Expression Level Abundance Confhi Locus Expression Level Countuncertaintyvar
  cufflinks   1.252 OK   Low 0.026   Low  
  cufflinks   14.763 OK     0.286      
  cufflinks   16.915 OK     0.392   High  
  cufflinks   9.352 OK     0.173      
  cufflinks   0.745 OK   Low 0.019   Low  
  cufflinks   8.089 OK   Low 0.149      
  cufflinks   9.723 OK     0.193      
  cufflinks   8.92 OK     0.234      
  cufflinks   4.732 OK   Low 0.1      
  cufflinks   3.184 OK   Low 0.085      
  cufflinks   6.572 OK     0.153      
  cufflinks   3.958 OK   Low 0.102      
  cufflinks   0.474 OK   Low 0.009   Low  
  cufflinks   0.565 OK   Low 0.013   Low  
  cufflinks   9.908 OK     0.184      
  cufflinks   12.891 OK     0.317      
  cufflinks   2.647 OK   Low 0.057      
  cufflinks   11.505 OK     0.248      
  cufflinks   3.812 OK   Low 0.077      
  cufflinks   17.732 OK     0.46   High  
  cufflinks   5.159 OK   Low 0.106      
  cufflinks   18.121 OK     0.472   High  
  cufflinks   11.087 OK     0.264      
  cufflinks   5.006 OK   Low 0.112      
  cufflinks     OK   Not Expressed 0.0   Not Expressed  
  cufflinks     OK   Low 0.144      
  cufflinks     OK   Low 0.224      
  cufflinks     OK     0.513      
  cufflinks     OK     0.824   High  
  cufflinks     OK   Low 0.057   Low