Gene : Potri.001G376500 P. trichocarpa

Defline:  similar to Malate dehydrogenase; similar to mitochondrial precursor (EC 1.1.1.37) (mNAD- MDH).; [ co-ortholog (2of2) of At1g53240, At3g15020, ] Name:  ? Potri.001G376500
Secondary Identifier:  ? PAC:27044421

Sequence Feature Displayer

Ontology Annotation Displayer

12 Pathways

Pathway Identifier Pathway name Organism Name Analysis Method Analysis Status
Ptrichocarpa GLUCONEO-PWY gluconeogenesis I Populus trichocarpa pathologic  
Ptrichocarpa GLUCONEO-PWY gluconeogenesis I Populus trichocarpa pathologic  
Ptrichocarpa PWY66-399 gluconeogenesis III Populus trichocarpa pathologic  
Ptrichocarpa PWY66-399 gluconeogenesis III Populus trichocarpa pathologic  
Ptrichocarpa PWY-7115 C4 photosynthetic carbon assimilation cycle, NAD-ME type Populus trichocarpa pathologic  
Ptrichocarpa PWY-7115 C4 photosynthetic carbon assimilation cycle, NAD-ME type Populus trichocarpa pathologic  
Ptrichocarpa PWY-5464 superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle Populus trichocarpa pathologic  
Ptrichocarpa PWY-5464 superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle Populus trichocarpa pathologic  
Ptrichocarpa PWY-561 superpathway of glyoxylate cycle and fatty acid degradation Populus trichocarpa pathologic  
Ptrichocarpa PWY-561 superpathway of glyoxylate cycle and fatty acid degradation Populus trichocarpa pathologic  
Ptrichocarpa GLYOXYLATE-BYPASS glyoxylate cycle Populus trichocarpa pathologic  
Ptrichocarpa PWY-5690 TCA cycle II (plants and fungi) Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

4 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.001G376500 5.0kb upstream 5.0kb upstream 9352   true Chr01: 39229408-39238759 Populus trichocarpa
Potri.001G376500 5.0kb upstream 5.0kb upstream 5000   false Chr01: 39233760-39238759 Populus trichocarpa
Potri.001G376500 5.0kb downstream 5.0kb downstream 9352   true Chr01: 39224408-39233759 Populus trichocarpa
Potri.001G376500 5.0kb downstream 5.0kb downstream 5000   false Chr01: 39224408-39229407 Populus trichocarpa

205 Homologs


Gene . Primary Identifier

Ortholog _ Organism . Short Name

Ortholog _ Gene . Primary Identifier
Potri.001G376500 C. papaya evm.TU.supercontig_131.66
Potri.001G376500 P. trichocarpa Potri.011G096300
Potri.001G376500 C. sinensis orange1.1g018314m.g
Potri.001G376500 A. thaliana AT3G15020
Potri.001G376500 A. thaliana AT1G53240
Potri.001G376500 P. trichocarpa Potri.011G096300
Potri.001G376500 E. salsugineum Thhalv10011552m.g
Potri.001G376500 P. trichocarpa Potri.011G096300
Potri.001G376500 C. clementina Ciclev10008562m.g
Potri.001G376500 P. trichocarpa Potri.011G096300
Potri.001G376500 C. rubella Carubv10009646m.g
Potri.001G376500 P. trichocarpa Potri.011G096300
Potri.001G376500 M. domestica MDP0000710761
Potri.001G376500 R. communis 30150.t000004
Potri.001G376500 P. trichocarpa Cucsa.273480
Potri.001G376500 L. usitatissimum Lus10038323.g
Potri.001G376500 L. usitatissimum Lus10013680.g
Potri.001G376500 L. usitatissimum Lus10017939.g
Potri.001G376500 P. trichocarpa Potri.011G096300
Potri.001G376500 C. subellipsoidea C-169 estExt_Genewise1.C_40150
Potri.001G376500 P. trichocarpa Potri.T143500
Potri.001G376500 P. trichocarpa Potri.004G054200
Potri.001G376500 P. trichocarpa Potri.011G096300
Potri.001G376500 M. pusilla CCMP1545 fgenesh3_kg.11_#_29_#_isotig01016
Potri.001G376500 P. trichocarpa Potri.T143500
Potri.001G376500 P. trichocarpa Potri.004G054200
Potri.001G376500 P. trichocarpa Potri.011G096300
Potri.001G376500 M. sp. RCC299 fgenesh2_kg.C_Chr_08000007
Potri.001G376500 P. trichocarpa Potri.T143500
Potri.001G376500 P. trichocarpa Potri.004G054200

40 Rna Seq Expressionss

Countvariance Method Conflo Count Status Countdispersionvar Library Expression Level Abundance Confhi Locus Expression Level Countuncertaintyvar
  cufflinks   4598.835 OK   High 24.958      
  cufflinks   2759.438 OK   High 15.812      
  cufflinks   3441.349 OK   High 23.385      
  cufflinks   5133.831 OK   High 28.305   High  
  cufflinks   1456.599 OK     10.201   Low  
  cufflinks   1847.43 OK   High 9.836   Low  
  cufflinks   2577.795 OK   High 14.995      
  cufflinks   1086.378 OK     8.315   Low  
  cufflinks   2548.889 OK   High 15.967      
  cufflinks   1618.051 OK   High 12.624      
  cufflinks   3876.599 OK   High 26.465      
  cufflinks   1423.445 OK   High 10.748   Low  
  cufflinks   3262.069 OK   High 15.071      
  cufflinks   1745.53 OK   High 11.856      
  cufflinks   2574.48 OK   High 14.004      
  cufflinks   2343.344 OK   High 16.909      
  cufflinks   6119.823 OK   High 38.566   High  
  cufflinks   3667.497 OK   High 23.143      
  cufflinks   4807.567 OK   High 28.768   High  
  cufflinks   1884.147 OK   High 14.332      
  cufflinks   4815.98 OK   High 29.057   High  
  cufflinks   1976.364 OK   High 15.062      
  cufflinks   3301.538 OK   High 23.262      
  cufflinks   4257.903 OK   High 27.914   High  
  cufflinks     OK     10.137      
  cufflinks     OK     7.894      
  cufflinks     OK     9.581      
  cufflinks     OK     10.68      
  cufflinks     OK     22.246      
  cufflinks     OK     10.025