Gene : Thhalv10004217m.g E. salsugineum v1.0
Defline:  (1 of 1) PTHR10836:SF39 - GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPB, CHLOROPLASTIC Genomic Order:  1968
Name:  ? Thhalv10004217m.g Secondary Identifier:  ? PAC:20200256
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Esalsugineum CALVIN-PWY Eutrema salsugineum pathologic  
Esalsugineum PHOTOALL-PWY Eutrema salsugineum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thhalv10004217m.g 0.5kb upstream 0.5kb upstream 4404 true scaffold_6: 11176021-11180424 Eutrema salsugineum
Thhalv10004217m.g 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 11176021-11176520 Eutrema salsugineum
Thhalv10004217m.g 0.5kb downstream 0.5kb downstream 4404 true scaffold_6: 11176521-11180924 Eutrema salsugineum
Thhalv10004217m.g 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 11180425-11180924 Eutrema salsugineum
Thhalv10004217m.g 1.0kb upstream 1.0kb upstream 4904 true scaffold_6: 11175521-11180424 Eutrema salsugineum
Thhalv10004217m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 11175521-11176520 Eutrema salsugineum
Thhalv10004217m.g 1.0kb downstream 1.0kb downstream 4904 true scaffold_6: 11176521-11181424 Eutrema salsugineum
Thhalv10004217m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 11180425-11181424 Eutrema salsugineum
Thhalv10004217m.g 2.0kb upstream 2.0kb upstream 5904 true scaffold_6: 11174521-11180424 Eutrema salsugineum
Thhalv10004217m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 11174521-11176520 Eutrema salsugineum
Thhalv10004217m.g 2.0kb downstream 2.0kb downstream 5904 true scaffold_6: 11176521-11182424 Eutrema salsugineum
Thhalv10004217m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 11180425-11182424 Eutrema salsugineum
Thhalv10004217m.g 5.0kb upstream 5.0kb upstream 8904 true scaffold_6: 11171521-11180424 Eutrema salsugineum
Thhalv10004217m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 11171521-11176520 Eutrema salsugineum
Thhalv10004217m.g 5.0kb downstream 5.0kb downstream 8904 true scaffold_6: 11176521-11185424 Eutrema salsugineum
Thhalv10004217m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 11180425-11185424 Eutrema salsugineum
Thhalv10004217m.g 10.0kb upstream 10.0kb upstream 13904 true scaffold_6: 11166521-11180424 Eutrema salsugineum
Thhalv10004217m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 11166521-11176520 Eutrema salsugineum
Thhalv10004217m.g 10.0kb downstream 10.0kb downstream 13904 true scaffold_6: 11176521-11190424 Eutrema salsugineum
Thhalv10004217m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 11180425-11190424 Eutrema salsugineum

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369088 5261 Brassicaceae View MSA
123835390 5264 Brassicales-Malvales View MSA
124344807 5266 SBM View MSA
124241337 5268 Malvidae View MSA
124062072 5270 Rosid View MSA
123746514 5271 Pentapetalae View MSA
122796484 5272 Eudicot View MSA
122047323 5273 Angiosperm View MSA
121310728 5274 Embryophyte View MSA
123425156 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain