Protein Domain : IPR005703

Type:  Family Name:  Ribosomal protein S3, eukaryotic/archaeal
Description:  Ribosomal protein S3 is one of the proteins from the small ribosomal subunit. This family describes ribosomal protein S3 of the eukaryotic cytosol and of the archaea.Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Short Name:  Ribosomal_S3_euk/arc

1 Child Features

DB identifier Type Name
IPR027488 Family Ribosomal protein S3, archaeal

5 Contains

DB identifier Type Name
IPR004087 Domain K Homology domain
IPR009019 Domain K homology domain, prokaryotic type
IPR004044 Domain K Homology domain, type 2
IPR001351 Domain Ribosomal protein S3, C-terminal
IPR018280 Conserved_site Ribosomal protein S3, conserved site

1 Cross References

Identifier
TIGR01008

0 Found In

3 GO Annotations

GO Term Gene Name
GO:0003735 IPR005703
GO:0006412 IPR005703
GO:0015935 IPR005703

3 Ontology Annotations

GO Term Gene Name
GO:0003735 IPR005703
GO:0006412 IPR005703
GO:0015935 IPR005703

0 Parent Features

835 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
270414 PAC:15420223 Selaginella moellendorffii 230  
438700 D8QYU4 PAC:15423262 Selaginella moellendorffii 236  
270666 PAC:15421786 Selaginella moellendorffii 230  
evm.model.supercontig_126.35 PAC:16407338 Carica papaya 191  
29739.m003605 B9RQV4 PAC:16807385 Ricinus communis 234  
29912.m005275 B9RK17 PAC:16813154 Ricinus communis 233  
Cucsa.117250.1 A0A0A0LHQ6 PAC:16960711 Cucumis sativus 243  
Cucsa.117250.2 PAC:16960712 Cucumis sativus 184  
Cucsa.360300.1 PAC:16980721 Cucumis sativus 236  
Cucsa.360300.2 PAC:16980722 Cucumis sativus 193  
orange1.1g026316m A0A067GTS6 PAC:18124630 Citrus sinensis 240  
orange1.1g026835m A0A067GJ71 PAC:18124631 Citrus sinensis 232  
orange1.1g029201m A0A067GTG9 PAC:18124632 Citrus sinensis 197  
orange1.1g026588m A0A067EEM2 PAC:18123733 Citrus sinensis 236  
AT5G35530.1 Q9FJA6 PAC:19671764 Arabidopsis thaliana 248  
AT3G53870.1 Q9M339 PAC:19660463 Arabidopsis thaliana 249  
AT2G31610.1 Q9SIP7 PAC:19641534 Arabidopsis thaliana 250  
Thhalv10017148m V4MGR0 PAC:20179835 Eutrema salsugineum 249  
Thhalv10017144m V4M9G9 PAC:20179703 Eutrema salsugineum 249  
Ciclev10026299m V4RX48 PAC:20800048 Citrus clementina 263  
Ciclev10026402m V4SFU3 PAC:20800049 Citrus clementina 232  
Ciclev10009346m V4UFG8 PAC:20795655 Citrus clementina 236  
Lus10012857 PAC:23163048 Linum usitatissimum 247  
Lus10033442 PAC:23172214 Linum usitatissimum 246  
Lus10030502 PAC:23140747 Linum usitatissimum 247  
Lus10030503 PAC:23140768 Linum usitatissimum 245  
Potri.015G071700.1 B9IEM3 PAC:27017701 Populus trichocarpa 233  
Potri.012G076800.1 PAC:27049024 Populus trichocarpa 261  
Potri.012G076800.2 A9PHW0 PAC:27049025 Populus trichocarpa 232  
Potri.018G049100.4 PAC:27011115 Populus trichocarpa 193  

3 Publications

First Author Title Year Journal Volume Pages PubMed ID
            11297922
            11290319
            11114498