Protein Domain : IPR013934

Type:  Domain Name:  Small-subunit processome, Utp13
Description:  A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar.They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis.There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are:Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. Short Name:  SSU_processome_Utp13

0 Child Features

0 Contains

1 Cross References

Identifier
PF08625

0 Found In

2 GO Annotations

GO Term Gene Name
GO:0006364 IPR013934
GO:0032040 IPR013934

2 Ontology Annotations

GO Term Gene Name
GO:0006364 IPR013934
GO:0032040 IPR013934

0 Parent Features

430 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
80645 D8QY94 PAC:15406827 Selaginella moellendorffii 824  
evm.model.supercontig_43.118 PAC:16419927 Carica papaya 377  
30073.m002288 B9S245 PAC:16816871 Ricinus communis 876  
Cucsa.166900.1 PAC:16966203 Cucumis sativus 871  
orange1.1g005254m PAC:18116474 Citrus sinensis 706  
orange1.1g002782m PAC:18116472 Citrus sinensis 882  
orange1.1g004214m PAC:18116473 Citrus sinensis 768  
AT5G16750.1 Q9LFE2 PAC:19672798 Arabidopsis thaliana 876  
Thhalv10012644m V4KUN7 PAC:20206503 Eutrema salsugineum 878  
Ciclev10018804m V4TXK5 PAC:20807270 Citrus clementina 882  
Lus10012706 PAC:23148231 Linum usitatissimum 897  
Lus10001301 PAC:23165453 Linum usitatissimum 859  
Potri.019G047300.1 PAC:27026843 Populus trichocarpa 853  
Potri.013G079600.2 A0A2K1Y2V9 PAC:26994300 Populus trichocarpa 868  
Potri.013G079600.1 PAC:26994299 Populus trichocarpa 913  
Gorai.013G183600.1 A0A0D2W7A3 PAC:26791092 Gossypium raimondii 883  
Gorai.013G183600.2 A0A0D2VFH4 PAC:26791091 Gossypium raimondii 883  
13852 I0Z4E8 PAC:27389899 Coccomyxa subellipsoidea C-169 820  
155203 PAC:27341505 Micromonas pusilla CCMP1545 1128  
83206 C1E9E7 PAC:27402290 Micromonas sp RCC299 875  
42847 A4S179 PAC:27419477 Ostreococcus lucimarinus 984  
Thecc1EG025503t1 A0A061EYF5 PAC:27425384 Theobroma cacao 887  
Migut.F00084.1.p A0A022RZA5 PAC:28931947 Mimulus guttatus 873  
Araha.9878s0001.1.p PAC:28849784 Arabidopsis halleri 878  
Cagra.0434s0042.1.p PAC:28897377 Capsella grandiflora 876  
Glyma.05G038000.1.p A0A0R0JZQ4 PAC:30523710 Glycine max 846  
Glyma.17G089100.1.p I1MTH0 PAC:30482464 Glycine max 879  
Glyma.19G076900.1.p A0A0R0EJ70 PAC:30514935 Glycine max 202  
Brara.B00677.1.p A0A398AE11 PAC:30608566 Brassica rapa FPsc 284  
Brara.J02073.1.p A0A397XM40 PAC:30613485 Brassica rapa FPsc 587  

4 Publications

First Author Title Year Journal Volume Pages PubMed ID
            12068309
            15590835
            15489292
            15231838