Protein Domain : IPR011082

Type:  Family Name:  Exosome-associated factor Rrp47/DNA strand repair C1D
Description:  The CD1 family of proteins includes exosome-associated cofactor Rrp47, and DNA double-strand repair protein C1D. Both of these proteins are implicated in DNA double-strand repair and in nuclear exosome activity.Rrp47 functions in nuclear RNA processing. Rrp47 is associated with nuclear exosomes, and with the nuclear exosome-specific 3'-5' exonuclease Rrp6.Rrp47 appears to be a substrate-specific nuclear cofactor that is required for the 3' processing of pre-rRNAs, snoRNAs and snRNAs (specifically U4 and U5) []. However, Rrp47 is not required for cytoplasmic exosome mRNA degradation. It also appears to have a role in DNA strand repair.C1D is an inducible nuclear matrix proteins that interacts with and activates the DNA-dependent protein kinase essential for DNA double-strand repair and V(D)J recombination []. C1D can interact with condensin, which is required for DNA repair and replication checkpoint control []. C1D also binds to nuclear exosomes and might regulate their functional activities, as it has RNA-binding activity []. Short Name:  Exosome-assoc_fac/DNA_repair

0 Child Features

0 Contains

1 Cross References

Identifier
PTHR15341

0 Found In

0 GO Annotation

0 Ontology Annotations

0 Parent Features

499 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
442808 D8RWB5 PAC:15413882 Selaginella moellendorffii 201  
evm.model.supercontig_148.17 PAC:16409235 Carica papaya 210  
29848.m004531 B9RNV0 PAC:16811187 Ricinus communis 206  
Cucsa.271460.1 A0A0A0L118 PAC:16973531 Cucumis sativus 211  
orange1.1g028255m A0A067FJ88 PAC:18109105 Citrus sinensis 211  
AT5G25080.1 Q93VA9 PAC:19672514 Arabidopsis thaliana 217  
Thhalv10004902m V4MKW9 PAC:20198421 Eutrema salsugineum 215  
Ciclev10009140m V4UMA7 PAC:20796196 Citrus clementina 279  
Lus10003434 PAC:23164895 Linum usitatissimum 166  
Lus10026882 PAC:23142853 Linum usitatissimum 210  
Potri.018G018100.2 B9IL67 PAC:27009472 Populus trichocarpa 211  
Potri.018G018100.1 B9IL67 PAC:27009473 Populus trichocarpa 211  
Potri.006G264700.1 B9HB62 PAC:27004586 Populus trichocarpa 212  
Potri.006G264700.2 B9HB62 PAC:27004585 Populus trichocarpa 212  
Gorai.009G063300.2 A0A0D2UH91 PAC:26770612 Gossypium raimondii 211  
Gorai.009G063300.1 A0A0D2UH91 PAC:26770613 Gossypium raimondii 211  
8873 C1MJF4 PAC:27346023 Micromonas pusilla CCMP1545 89  
56563 C1DZE8 PAC:27396482 Micromonas sp RCC299 153  
14690 A4RUQ3 PAC:27413282 Ostreococcus lucimarinus 181  
Thecc1EG036901t1 A0A061GIF8 PAC:27429653 Theobroma cacao 206  
Migut.A00358.1.p A0A022Q242 PAC:28939607 Mimulus guttatus 216  
Araha.0971s0006.1.p PAC:28844303 Arabidopsis halleri 215  
Cagra.1945s0004.1.p PAC:28901639 Capsella grandiflora 218  
Glyma.06G061100.2.p I1K8L9 PAC:30549917 Glycine max 211  
Glyma.06G061100.1.p I1K8L9 PAC:30549918 Glycine max 211  
Glyma.14G101700.1.p C6T2F3 PAC:30534246 Glycine max 181  
Brara.F02710.1.p A0A397Z8H4 PAC:30628611 Brassica rapa FPsc 219  
Brara.I00556.1.p A0A397XZ18 PAC:30644312 Brassica rapa FPsc 227  
Brara.I00556.2.p A0A397XR81 PAC:30644313 Brassica rapa FPsc 221  
Bostr.5763s0013.1.p PAC:30673559 Boechera stricta 219  

4 Publications

First Author Title Year Journal Volume Pages PubMed ID
            12972615
            12421302
            17412707
            15148393