Protein Domain : IPR006236

Type:  Family Name:  D-3-phosphoglycerate dehydrogenase
Description:  Phosphoglycerate dehydrogenases (PGDH) have at least two different structural domains: the nucleotide binding and the substrate binding. There are three types of PGDH: type 3 enzymes are composed only of these two domains, type2 enzymes contain an extra C-terminal regulatory domain (ACT domain), type 1 enzymes contain both the regulatory domain and an extra allosteric domain [, ]. This entry represents the type 1 enzyme. Interestingly, this type of PGDH is found in bacteria such as Mycobacterium, Bacillus subtilis, Corynebacterium, plants such as Arabidopsis, and higher order eukaryotes, including mammals. The PGDHs from E. coli and some lower eukaryotes, such as yeast and Neurospora, belong to the type2 PGDH and are not included in this entry []. PGDH catalyses an early step in the biosynthesis of L-serine by converting D-3-phosphoglyceric acid to hydroxypyruvic acid phosphate (HPAP), utilising NAD+ as a coenzyme [, ]. Type 1 PGDH is mostly studied in M. tuberculosis. Both E.coli and M. tuberculosis PGDHs are very sensitive to inhibition by L-serine []. However, the mammalian enzymes are not inhibited by L-serine. The structural difference between human and M. tuberculosis PGDHs may explain the differential sensitivity to serine inhibition []. Short Name:  PGDH

0 Child Features

3 Contains

DB identifier Type Name
IPR002912 Domain ACT domain
IPR006140 Domain D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain
IPR006139 Domain D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain

1 Cross References

Identifier
TIGR01327

0 Found In

2 GO Annotations

GO Term Gene Name
GO:0004617 IPR006236
GO:0006564 IPR006236

2 Ontology Annotations

GO Term Gene Name
GO:0004617 IPR006236
GO:0006564 IPR006236

0 Parent Features

918 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
267539 PAC:15412005 Selaginella moellendorffii 594  
149626 D8RSY4 PAC:15412240 Selaginella moellendorffii 545  
evm.model.supercontig_21.148 PAC:16413423 Carica papaya 650  
evm.model.supercontig_375.5 PAC:16418818 Carica papaya 626  
29801.m003106 B9RYA3 PAC:16808956 Ricinus communis 596  
30158.m000507 B9SG91 PAC:16820925 Ricinus communis 633  
30170.m013699 B9R765 PAC:16821546 Ricinus communis 598  
Cucsa.192110.1 PAC:16967923 Cucumis sativus 636  
Cucsa.244600.1 A0A0A0LBW6 PAC:16971324 Cucumis sativus 599  
orange1.1g006212m A0A067DFN5 PAC:18111042 Citrus sinensis 656  
orange1.1g006864m A0A067DF93 PAC:18111043 Citrus sinensis 628  
orange1.1g007512m A0A067F9E7 PAC:18100151 Citrus sinensis 600  
orange1.1g046427m A0A067GWF5 PAC:18091757 Citrus sinensis 595  
AT4G34200.1 O49485 PAC:19644055 Arabidopsis thaliana 603  
AT3G19480.1 Q9LT69 PAC:19662903 Arabidopsis thaliana 588  
AT1G17745.1 O04130 PAC:19649811 Arabidopsis thaliana 624  
Thhalv10024715m V4LSY1 PAC:20194022 Eutrema salsugineum 601  
Thhalv10022606m V4MEU4 PAC:20202428 Eutrema salsugineum 604  
Thhalv10020363m V4NN97 PAC:20182988 Eutrema salsugineum 588  
Thhalv10007072m V4KYF7 PAC:20185356 Eutrema salsugineum 625  
Ciclev10000651m V4V765 PAC:20785619 Citrus clementina 595  
Ciclev10028055m V4SBI8 PAC:20812417 Citrus clementina 600  
Ciclev10025156m V4UNF3 PAC:20800535 Citrus clementina 628  
Ciclev10025148m V4SPV9 PAC:20800534 Citrus clementina 632  
Lus10027868 PAC:23157003 Linum usitatissimum 593  
Lus10014096 PAC:23156827 Linum usitatissimum 595  
Lus10019818 PAC:23163948 Linum usitatissimum 595  
Potri.009G096600.1 B9HS53 PAC:26987165 Populus trichocarpa 597  
Potri.001G300900.1 B9GHD7 PAC:27048505 Populus trichocarpa 597  
Potri.002G122700.1 B9GNT1 PAC:27020101 Populus trichocarpa 598  

3 Publications

First Author Title Year Journal Volume Pages PubMed ID
            15668249
            22023909
            19924905