Protein Domain : IPR005704

Type:  Family Name:  Ribosomal protein S3, bacterial
Description:  Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ].Ribosomal protein S3 is one of the proteins from the small ribosomal subunit. This family describes the bacterial type of ribosomal protein S3 and also and many chloroplast forms. Chloroplast and mitochondrial forms have large, variable inserts between conserved N-terminal and C-terminal domains. Short Name:  Ribosomal_S3_bac

0 Child Features

5 Contains

DB identifier Type Name
IPR004087 Domain K Homology domain
IPR009019 Domain K homology domain, prokaryotic type
IPR004044 Domain K Homology domain, type 2
IPR001351 Domain Ribosomal protein S3, C-terminal
IPR018280 Conserved_site Ribosomal protein S3, conserved site

2 Cross Referencess

Identifier
TIGR01009
MF_01309_B

0 Found In

3 GO Annotations

GO Term Gene Name
GO:0003735 IPR005704
GO:0006412 IPR005704
GO:0015935 IPR005704

3 Ontology Annotations

GO Term Gene Name
GO:0003735 IPR005704
GO:0006412 IPR005704
GO:0015935 IPR005704

0 Parent Features

464 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
137759 D8TEA6 PAC:15422234 Selaginella moellendorffii 224  
evm.model.supercontig_0.194 PAC:16403907 Carica papaya 218  
ATCG00800.1 P56798 PAC:19637966 Arabidopsis thaliana 218  
Thhalv10010706m V4NI98 PAC:20207132 Eutrema salsugineum 218  
Gorai.010G148900.1 A0A0D2UEM4 PAC:26761425 Gossypium raimondii 179  
Gorai.011G034100.1 A0A0D2ULQ1 PAC:26810018 Gossypium raimondii 144  
Thecc1EG046403t1 PAC:27459532 Theobroma cacao 155  
Migut.D01324.1.p PAC:28928346 Mimulus guttatus 76  
Araha.11756s0201.1.p PAC:28856260 Arabidopsis halleri 233  
Glyma.U009100.1.p A0A0R0C5S4 PAC:30523473 Glycine max 137  
Medtr4g051410.1 G7JH60 PAC:31113982 Medicago truncatula 214  
Medtr0002s0790.1 A0A072TJW6 PAC:31084762 Medicago truncatula 239  
Spipo0G0145000 PAC:31509100 Spirodela polyrhiza 218  
evm_27.model.AmTr_v1.0_scaffold00585.4 W1NKS8 PAC:31562915 Amborella trichopoda 127  
Traes_1AL_6CD571A59.1 PAC:31772249 Triticum aestivum 239  
Traes_1AS_6CD571A59.1 PAC:31738705 Triticum aestivum 239  
Traes_1BS_6CD571A59.1 PAC:31856535 Triticum aestivum 239  
Traes_1DS_54203DAB7.1 PAC:32021307 Triticum aestivum 239  
Traes_2AL_6CD571A59.1 PAC:31834645 Triticum aestivum 239  
Traes_2BL_2A3BEA1D0.1 PAC:31811763 Triticum aestivum 239  
Traes_2BS_6CD571A59.1 PAC:31817584 Triticum aestivum 239  
Traes_2DL_C3859623A.1 PAC:31936333 Triticum aestivum 166  
Traes_2DL_C3859623A1.1 PAC:31973805 Triticum aestivum 166  
Traes_2DS_F977C81A2.1 PAC:31984193 Triticum aestivum 239  
Traes_3AL_89C632887.1 PAC:31921775 Triticum aestivum 184  
Traes_3B_6CD571A59.1 PAC:31808812 Triticum aestivum 239  
Traes_3DL_6CD571A59.1 PAC:31837203 Triticum aestivum 239  
Traes_3DS_F507396D3.1 PAC:31801989 Triticum aestivum 137  
Traes_4AL_6CD571A59.1 PAC:31786742 Triticum aestivum 239  
Traes_4AS_6CD571A59.1 PAC:31973159 Triticum aestivum 239  

3 Publications

First Author Title Year Journal Volume Pages PubMed ID
            11297922
            11290319
            11114498