Protein Domain : IPR013498

Type:  Domain Name:  DNA topoisomerase, type IA, zn finger
Description:  DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (; topoisomerases II, IV and VI) break double-strand DNA [].Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. This entry represents the zinc-finger domain found in type IA topoisomerases, including bacterial and archaeal topoisomerase I and III enzymes, and in eukaryotic topoisomerase III enzymes. Escherichia colitopoisomerase I proteins contain five copies of a zinc-ribbon-like domain at their C terminus, two of which have lost their cysteine residues and are therefore probably not able to bind zinc []. This domain is still considered to be a member of the zinc-ribbon superfamily despite not being able to bind zinc. Short Name:  Topo_IA_Znf

0 Child Features

0 Contains

1 Cross References

Identifier
PF01396

3 Found Ins

DB identifier Type Name
IPR005733 Family DNA topoisomerase I, bacterial-type
IPR005739 Family DNA topoisomerase I, archeal-type
IPR014538 Family Uncharacterised conserved protein, topoisomerase zinc finger

4 GO Annotations

GO Term Gene Name
GO:0003677 IPR013498
GO:0003916 IPR013498
GO:0006265 IPR013498
GO:0005694 IPR013498

4 Ontology Annotations

GO Term Gene Name
GO:0003677 IPR013498
GO:0003916 IPR013498
GO:0006265 IPR013498
GO:0005694 IPR013498

0 Parent Features

3256 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
94303 D8RIM2 PAC:15423298 Selaginella moellendorffii 794  
123748 D8SSL3 PAC:15403346 Selaginella moellendorffii 795  
30149.m000235 B9SN22 PAC:16820644 Ricinus communis 833  
47458.m000013 B9TJX8 PAC:16827999 Ricinus communis 290  
Cucsa.311140.2 PAC:16976640 Cucumis sativus 1135  
Cucsa.311140.1 PAC:16976639 Cucumis sativus 1173  
orange1.1g001100m PAC:18109309 Citrus sinensis 1158  
orange1.1g001106m PAC:18109310 Citrus sinensis 1157  
orange1.1g046997m PAC:18126654 Citrus sinensis 807  
AT4G31210.1 F4JRX3 PAC:19645326 Arabidopsis thaliana 1284  
AT5G63920.1 Q9LVP1 PAC:19666283 Arabidopsis thaliana 926  
Thhalv10024242m V4MCD4 PAC:20195642 Eutrema salsugineum 1214  
Thhalv10003618m V4KVW8 PAC:20198579 Eutrema salsugineum 930  
Ciclev10003112m V4SX32 PAC:20788824 Citrus clementina 794  
Ciclev10007345m V4UBC5 PAC:20796004 Citrus clementina 984  
Lus10020186 PAC:23141978 Linum usitatissimum 807  
Lus10026990 PAC:23142956 Linum usitatissimum 500  
Potri.005G067100.1 A0A2K2ACL1 PAC:27031179 Populus trichocarpa 918  
Potri.006G279700.1 U5G8Z4 PAC:27005820 Populus trichocarpa 1120  
Gorai.010G125500.3 PAC:26758190 Gossypium raimondii 1097  
Gorai.010G125500.2 PAC:26758191 Gossypium raimondii 1077  
Gorai.010G125500.1 PAC:26758189 Gossypium raimondii 1130  
Gorai.007G066700.1 A0A0D2P435 PAC:26778399 Gossypium raimondii 928  
Gorai.007G066700.2 A0A0D2QMJ5 PAC:26778400 Gossypium raimondii 909  
Gorai.007G066700.4 A0A0D2P435 PAC:26778398 Gossypium raimondii 928  
Gorai.007G066700.3 A0A0D2QMJ5 PAC:26778401 Gossypium raimondii 909  
60793 I0Z559 PAC:27390727 Coccomyxa subellipsoidea C-169 986  
57713 C1MSJ2 PAC:27341410 Micromonas pusilla CCMP1545 1243  
59701 C1E9E3 PAC:27401880 Micromonas sp RCC299 1227  
41359 A4RYV6 PAC:27418383 Ostreococcus lucimarinus 840  

5 Publications

First Author Title Year Journal Volume Pages PubMed ID
            7770916
            11395412
            12596227
            12042765
            10873443