Protein Domain : IPR005162

Type:  Domain Name:  Retrotransposon gag domain
Description:  Transposable elements (TEs) promote various chromosomal rearrangements more efficiently, and often more specifically, than other cellular processes. Retrotransposons are structurally similar to retroviruses and are bounded by long terminal repeats. This entry represents eukaryotic Gag or capsid-related retrotranspon-related proteins. There is a central motif QGXXEXXXXXFXXLXXH that is common to Retroviridae gag-proteins, but is poorly conserved []. Short Name:  Retrotrans_gag_dom
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0 Child Features

0 Contains

1 Cross References

Identifier
PF03732

0 Found In

0 GO Annotation

0 Ontology Annotations

0 Parent Features

3256 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
410547 D8RF37 PAC:15406412 Selaginella moellendorffii 647  
411657 D8RIM1 PAC:15410207 Selaginella moellendorffii 541  
406311 D8R1Y8 PAC:15415254 Selaginella moellendorffii 641  
421552 D8SFM3 PAC:15416546 Selaginella moellendorffii 354  
evm.TU.contig_39004.1 PAC:16431276 Carica papaya 96  
evm.TU.contig_46283.1 PAC:16432276 Carica papaya 101  
evm.model.supercontig_0.189 PAC:16403901 Carica papaya 306  
evm.model.supercontig_0.19 PAC:16403902 Carica papaya 168  
evm.model.supercontig_0.192 PAC:16403905 Carica papaya 107  
evm.model.supercontig_0.175 PAC:16403886 Carica papaya 378  
evm.model.supercontig_0.37 PAC:16403941 Carica papaya 154  
evm.model.supercontig_0.24 PAC:16403927 Carica papaya 123  
evm.model.supercontig_0.47 PAC:16403952 Carica papaya 324  
evm.model.supercontig_1.399 PAC:16404342 Carica papaya 60  
evm.model.supercontig_1.420 PAC:16404367 Carica papaya 210  
evm.model.supercontig_10.192 PAC:16404551 Carica papaya 186  
evm.model.supercontig_100.17 PAC:16404728 Carica papaya 79  
evm.model.supercontig_100.28 PAC:16404740 Carica papaya 215  
evm.model.supercontig_102.31 PAC:16404850 Carica papaya 223  
evm.model.supercontig_1083.1 PAC:16405509 Carica papaya 198  
evm.model.supercontig_11.128 PAC:16405616 Carica papaya 261  
evm.model.supercontig_11.159 PAC:16405650 Carica papaya 165  
evm.model.supercontig_11.81 PAC:16405751 Carica papaya 270  
evm.model.supercontig_110.31 PAC:16405795 Carica papaya 396  
evm.model.supercontig_110.48 PAC:16405813 Carica papaya 67  
evm.model.supercontig_112.15 PAC:16405913 Carica papaya 196  
evm.model.supercontig_1166.2 PAC:16406360 Carica papaya 183  
evm.model.supercontig_118.7 PAC:16406509 Carica papaya 208  
evm.model.supercontig_12.264 PAC:16406819 Carica papaya 333  
evm.model.supercontig_121.18 PAC:16407022 Carica papaya 193  

1 Publications

First Author Title Year Journal Volume Pages PubMed ID
            11600699