Protein Domain : IPR004808

Type:  Family Name:  AP endonuclease 1
Description:  AP endonucleases can be classified into two families based on sequence similarity. This family contains members of AP endonuclease family 1. They are endonucleases that remove the damaged DNA at cytosines and guanines by cleaving on the 3'-side of the AP site by a beta-elimination reaction []. The proteins contain glutamate which has been shown [] in the Escherichia colienzyme to bind a divalent metal ion such as magnesium or manganese.DNA damaging agents such as the anti-tumour drugs bleomycin and neocarzinostatin or those that generate oxygen radicals produce a variety of lesions in DNA. Amongst these is base-loss which forms apurinic/apyrimidinic (AP) sites or strand breaks with atypical 3' termini. DNA repair at the AP sites is initiated by specific endonuclease cleavage of the phosphodiester backbone. Such endonucleases are also generally capable of removing blocking groups from the 3' terminus of DNA strand breaks. Short Name:  AP_endonuc_1

0 Child Features

0 Contains

3 Cross Referencess

Identifier
PTHR22748
PS51435
TIGR00633

0 Found In

2 GO Annotations

GO Term Gene Name
GO:0004518 IPR004808
GO:0006281 IPR004808

2 Ontology Annotations

GO Term Gene Name
GO:0004518 IPR004808
GO:0006281 IPR004808

0 Parent Features

3256 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
430260 D8T8V3 PAC:15418607 Selaginella moellendorffii 379  
187330 D8TCC8 PAC:15410629 Selaginella moellendorffii 351  
99746 D8RR84 PAC:15418884 Selaginella moellendorffii 306  
405855 D8QZW7 PAC:15416218 Selaginella moellendorffii 589  
405812 D8QZS5 PAC:15416137 Selaginella moellendorffii 388  
81439 D8QZR9 PAC:15408180 Selaginella moellendorffii 540  
evm.TU.contig_45383.1 PAC:16432171 Carica papaya 78  
evm.model.supercontig_120.9 PAC:16407003 Carica papaya 397  
evm.model.supercontig_6.256 PAC:16423438 Carica papaya 610  
29830.m001385 B9S6N7 PAC:16810127 Ricinus communis 586  
30147.m013815 B9RAP1 PAC:16819831 Ricinus communis 326  
32336.m000027 B9TEY1 PAC:16825391 Ricinus communis 130  
28470.m000438 B9SVS9 PAC:16800927 Ricinus communis 486  
Cucsa.338410.1 PAC:16978747 Cucumis sativus 557  
Cucsa.338410.2 PAC:16978748 Cucumis sativus 467  
Cucsa.338410.3 PAC:16978749 Cucumis sativus 467  
Cucsa.391670.1 A0A0A0LR25 PAC:16982959 Cucumis sativus 361  
Cucsa.043590.1 A0A0A0KMF7 PAC:16953075 Cucumis sativus 611  
Cucsa.043590.2 PAC:16953076 Cucumis sativus 498  
orange1.1g010035m PAC:18098583 Citrus sinensis 519  
orange1.1g007013m PAC:18098582 Citrus sinensis 621  
orange1.1g010464m PAC:18098584 Citrus sinensis 510  
orange1.1g011576m PAC:18098585 Citrus sinensis 482  
orange1.1g006757m PAC:18098579 Citrus sinensis 632  
orange1.1g006804m PAC:18098580 Citrus sinensis 630  
orange1.1g006881m PAC:18098581 Citrus sinensis 627  
orange1.1g018111m A0A067FT80 PAC:18132270 Citrus sinensis 360  
orange1.1g017771m A0A067G1L8 PAC:18132269 Citrus sinensis 366  
orange1.1g019834m A0A067FPQ1 PAC:18132271 Citrus sinensis 335  
orange1.1g023119m A0A067G1M2 PAC:18132272 Citrus sinensis 287  

1 Publications

First Author Title Year Journal Volume Pages PubMed ID
            7885481