Protein Domain : IPR001976

Type:  Family Name:  Ribosomal protein S24e
Description:  Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ].This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids. Short Name:  Ribosomal_S24e

0 Child Features

1 Contains

DB identifier Type Name
IPR018098 Conserved_site Ribosomal S24e conserved site

4 Cross Referencess

Identifier
PTHR10496
PF01282
PD006052
MF_00545

0 Found In

4 GO Annotations

GO Term Gene Name
GO:0003735 IPR001976
GO:0006412 IPR001976
GO:0005622 IPR001976
GO:0005840 IPR001976

4 Ontology Annotations

GO Term Gene Name
GO:0003735 IPR001976
GO:0006412 IPR001976
GO:0005622 IPR001976
GO:0005840 IPR001976

0 Parent Features

909 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
271584 D8SHH4 PAC:15401725 Selaginella moellendorffii 138  
227903 D8REL6 PAC:15408445 Selaginella moellendorffii 138  
evm.model.supercontig_264.13 PAC:16415412 Carica papaya 137  
evm.model.supercontig_58.113 PAC:16422956 Carica papaya 137  
30128.m008632 B9RES8 PAC:16818222 Ricinus communis 137  
30198.m000872 B9RWY8 PAC:16823780 Ricinus communis 137  
Cucsa.133470.1 A0A0A0LFK1 PAC:16962728 Cucumis sativus 137  
Cucsa.332340.1 A0A0A0LYE3 PAC:16978283 Cucumis sativus 137  
orange1.1g037293m A0A067DB90 PAC:18121259 Citrus sinensis 82  
orange1.1g032770m A0A067GGY8 PAC:18105785 Citrus sinensis 134  
orange1.1g034307m A0A067GGP7 PAC:18105786 Citrus sinensis 98  
orange1.1g032727m A0A067FZU9 PAC:18093208 Citrus sinensis 135  
orange1.1g032760m A0A067EHB1 PAC:18133304 Citrus sinensis 134  
AT5G28060.1 Q8LC83 PAC:19672541 Arabidopsis thaliana 133  
AT3G04920.1 Q9SS17 PAC:19659761 Arabidopsis thaliana 133  
Thhalv10021752m V4MAY3 PAC:20183212 Eutrema salsugineum 133  
Thhalv10005344m V4K3X9 PAC:20199838 Eutrema salsugineum 94  
Thhalv10005119m V4KY05 PAC:20199002 Eutrema salsugineum 133  
Ciclev10002819m V4SF69 PAC:20786600 Citrus clementina 134  
Ciclev10022807m V4U547 PAC:20808388 Citrus clementina 135  
Ciclev10022808m V4U547 PAC:20808389 Citrus clementina 135  
Ciclev10006193m V4S8E9 PAC:20792394 Citrus clementina 134  
Ciclev10006194m V4S8E9 PAC:20792395 Citrus clementina 134  
Lus10015941 PAC:23143787 Linum usitatissimum 90  
Lus10004123 PAC:23157521 Linum usitatissimum 141  
Lus10000938 PAC:23172921 Linum usitatissimum 141  
Potri.016G113900.1 A0A2K1XE79 PAC:27012348 Populus trichocarpa 82  
Potri.010G087800.1 A9PC05 PAC:26978613 Populus trichocarpa 134  
Potri.005G049400.2 PAC:27028891 Populus trichocarpa 112  
Potri.005G049400.1 A9P8Z2 PAC:27028890 Populus trichocarpa 134  

3 Publications

First Author Title Year Journal Volume Pages PubMed ID
            11297922
            11290319
            11114498