Protein Domain : IPR002343

Type:  Family Name:  Paraneoplastic encephalomyelitis antigen
Description:  Many eukaryotic proteins that are either known or thought to bind single-stranded RNA contain one or more copies of a putative RNA-binding domain of about 90 amino acids [, ]. This region has been found in, for example,heterogeneous nuclear ribonucleoproteins, small nuclear ribonucleoproteins, pre-RNA and mRNA associated proteins, Drosophila sex determination and elavproteins, human paraneoplastic encephalomyelitis antigen HuD, and many others.The structure of an RNA-binding domain of Drosophila Sex-lethal (Sxl) protein has been determined using multi-dimensional hetero-nuclear NMR [].Sxl contains two RNP consensus-type RNA-binding domains (RBDs) - the determined structure represents the second of these (RBD-2) []. Thecalculated intermediate-resolution family of structures exhibits the beta-alpha-beta/beta-alpha-beta tertiary fold found in other RBD-containingproteins []. Short Name:  Hud_Sxl_RNA

2 Child Features

DB identifier Type Name
IPR006548 Family Splicing factor ELAV/HuD
IPR006546 Family Sex-lethal splicing factor

1 Contains

DB identifier Type Name
IPR000504 Domain RNA recognition motif domain

1 Cross References

Identifier
PR00961

0 Found In

1 GO Annotation

GO Term Gene Name
GO:0003723 IPR002343

1 Ontology Annotations

GO Term Gene Name
GO:0003723 IPR002343

0 Parent Features

858 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
442777 D8RW01 PAC:15413233 Selaginella moellendorffii 427  
132785 PAC:15407676 Selaginella moellendorffii 197  
evm.model.supercontig_9.154 PAC:16428040 Carica papaya 516  
29889.m003323 B9RZT3 PAC:16812270 Ricinus communis 811  
29647.m002041 B9S3Y1 PAC:16804686 Ricinus communis 436  
Cucsa.364050.1 PAC:16981197 Cucumis sativus 652  
Cucsa.084710.1 A0A0A0K5R5 PAC:16956586 Cucumis sativus 438  
Cucsa.084710.2 PAC:16956587 Cucumis sativus 360  
orange1.1g005357m A0A067FX43 PAC:18109656 Citrus sinensis 700  
orange1.1g005366m A0A067FX43 PAC:18109655 Citrus sinensis 700  
orange1.1g012896m A0A067EXA7 PAC:18100121 Citrus sinensis 454  
orange1.1g010577m A0A067EXH4 PAC:18100120 Citrus sinensis 507  
orange1.1g015870m A0A067F110 PAC:18100122 Citrus sinensis 399  
orange1.1g014217m A0A067HH70 PAC:18136667 Citrus sinensis 428  
orange1.1g013926m A0A067H5X6 PAC:18136666 Citrus sinensis 434  
orange1.1g015716m A0A067H6C9 PAC:18136668 Citrus sinensis 402  
orange1.1g018554m A0A067H8U1 PAC:18136669 Citrus sinensis 354  
orange1.1g013840m A0A067HHG3 PAC:18136665 Citrus sinensis 435  
AT4G03110.2 PAC:19645773 Arabidopsis thaliana 439  
AT4G03110.1 Q8LFS6 PAC:19645772 Arabidopsis thaliana 441  
AT4G16280.3 O04425 PAC:19648819 Arabidopsis thaliana 533  
AT4G34110.1 P42731 PAC:19646687 Arabidopsis thaliana 629  
AT1G03457.2 F4I0X0 PAC:19654880 Arabidopsis thaliana 438  
AT1G03457.1 Q8GZ26 PAC:19654881 Arabidopsis thaliana 429  
Thhalv10024393m PAC:20195687 Eutrema salsugineum 843  
Thhalv10000075m V4NJ20 PAC:20208294 Eutrema salsugineum 652  
Thhalv10028663m V4L6R1 PAC:20197129 Eutrema salsugineum 441  
Thhalv10007707m V4KFQ1 PAC:20188601 Eutrema salsugineum 426  
Ciclev10027999m V4SBL9 PAC:20814375 Citrus clementina 645  
Ciclev10020209m V4U5I4 PAC:20810694 Citrus clementina 434  

3 Publications

First Author Title Year Journal Volume Pages PubMed ID
            2470643
            3072706
            7524663