Protein Domain : IPR006591

Type:  Family Name:  RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4
Description:  DNA-directed RNA polymerases (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel.RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise:RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs.RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits.This family includes the DNA-directed RNA polymerases I, II, and III subunit RPABC4 (also known as RPC10 and ABC10-alpha) [] and archaeal polymerase subunit P []. Short Name:  RNAP_P/RPABC4

1 Child Features

DB identifier Type Name
IPR023464 Family DNA-directed RNA polymerase subunit P (Rpo12)

0 Contains

3 Cross Referencess

Identifier
PF03604
SM00659
G3DSA:2.20.28.30

0 Found In

3 GO Annotations

GO Term Gene Name
GO:0003677 IPR006591
GO:0003899 IPR006591
GO:0006351 IPR006591

3 Ontology Annotations

GO Term Gene Name
GO:0003677 IPR006591
GO:0003899 IPR006591
GO:0006351 IPR006591

0 Parent Features

3256 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
413540 D8RQL2 PAC:15415277 Selaginella moellendorffii 270  
173570 D8RRJ3 PAC:15415674 Selaginella moellendorffii 67  
6561 D8RVH4 PAC:15422391 Selaginella moellendorffii 117  
6836 D8R460 PAC:15402335 Selaginella moellendorffii 115  
9162 D8QSV9 PAC:15405812 Selaginella moellendorffii 75  
evm.model.supercontig_126.40 PAC:16407344 Carica papaya 456  
evm.model.supercontig_128.24 PAC:16407447 Carica papaya 727  
evm.model.supercontig_148.16 PAC:16409234 Carica papaya 396  
evm.model.supercontig_25.208 PAC:16414810 Carica papaya 94  
evm.model.supercontig_485.1 PAC:16420981 Carica papaya 276  
evm.model.supercontig_854.2 PAC:16427546 Carica papaya 160  
30174.m008738 B9RE55 PAC:16822383 Ricinus communis 582  
45324.m000015 B9TQ03 PAC:16827792 Ricinus communis 211  
28153.m000284 B9T4A7 PAC:16800088 Ricinus communis 279  
28152.m000922 B9SNE7 PAC:16800072 Ricinus communis 51  
Cucsa.122310.1 A0A0A0LQM4 PAC:16961450 Cucumis sativus 51  
Cucsa.122310.2 A0A0A0LQM4 PAC:16961451 Cucumis sativus 51  
Cucsa.122310.3 A0A0A0LQM4 PAC:16961452 Cucumis sativus 51  
Cucsa.122310.4 A0A0A0LQM4 PAC:16961453 Cucumis sativus 51  
Cucsa.184270.1 PAC:16967536 Cucumis sativus 313  
orange1.1g038378m A0A067D5N4 PAC:18095947 Citrus sinensis 483  
orange1.1g035461m A0A067GN92 PAC:18138579 Citrus sinensis 51  
orange1.1g035423m A0A067GB53 PAC:18138580 Citrus sinensis 35  
orange1.1g005957m A0A067FHC6 PAC:18133685 Citrus sinensis 667  
orange1.1g006228m A0A067FQS5 PAC:18133686 Citrus sinensis 655  
orange1.1g008013m A0A067FQ09 PAC:18133688 Citrus sinensis 581  
orange1.1g008006m A0A067FQ09 PAC:18133687 Citrus sinensis 581  
orange1.1g026283m A0A067EGM4 PAC:18122606 Citrus sinensis 240  
AT3G63060.1 Q93ZT5 PAC:19662537 Arabidopsis thaliana 272  
AT5G41010.1 Q9FLM8 PAC:19667956 Arabidopsis thaliana 51  

4 Publications

First Author Title Year Journal Volume Pages PubMed ID
            19419240
            3052291
            10499798
            10559229