Protein Domain : IPR006032

Type:  Family Name:  Ribosomal protein S12/S23
Description:  Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ].Ribosomal protein S12 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S12 is known to be involved in the translation initiation step. It is a very basic protein of 120 to 150 amino-acid residues. S12belongs to a family of ribosomal proteins which are grouped on the basis of sequence similarities. This protein is known typically as S12 in bacteria, S23 in eukaryotes and as either S12 or S23 in the Archaea.Bacterial S12 molecules contain a conserved aspartic acid residue which undergoes a novel post-translational modification, beta-methylthiolation, to form the corresponding 3-methylthioaspartic acid. Short Name:  Ribosomal_S12/S23

2 Child Features

DB identifier Type Name
IPR005680 Family Ribosomal protein S23, eukaryotic/archaeal
IPR005679 Family Ribosomal protein S12, bacteria

1 Contains

DB identifier Type Name
IPR012340 Domain Nucleic acid-binding, OB-fold

4 Cross Referencess

Identifier
PTHR11652
PF00164
PIRSF002133
PS00055

0 Found In

4 GO Annotations

GO Term Gene Name
GO:0003735 IPR006032
GO:0006412 IPR006032
GO:0005622 IPR006032
GO:0005840 IPR006032

4 Ontology Annotations

GO Term Gene Name
GO:0003735 IPR006032
GO:0006412 IPR006032
GO:0005622 IPR006032
GO:0005840 IPR006032

0 Parent Features

3256 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
92747 D8RG21 PAC:15420689 Selaginella moellendorffii 127  
77819 D8QSD4 PAC:15421507 Selaginella moellendorffii 116  
145246 D8R982 PAC:15419842 Selaginella moellendorffii 142  
evm.model.supercontig_114.39 PAC:16406130 Carica papaya 763  
evm.model.supercontig_114.25 PAC:16406115 Carica papaya 142  
evm.model.supercontig_53.19 PAC:16422240 Carica papaya 147  
29805.m001485 PAC:16809191 Ricinus communis 142  
29923.m000807 PAC:16813663 Ricinus communis 142  
Cucsa.052660.1 PAC:16954261 Cucumis sativus 144  
Cucsa.052660.3 PAC:16954263 Cucumis sativus 136  
Cucsa.052660.2 PAC:16954262 Cucumis sativus 142  
Cucsa.275740.1 PAC:16974021 Cucumis sativus 142  
Cucsa.307150.2 PAC:16976172 Cucumis sativus 136  
Cucsa.307150.1 PAC:16976171 Cucumis sativus 142  
orange1.1g042342m A0A067D8E2 PAC:18128632 Citrus sinensis 87  
orange1.1g032641m A0A067GCP0 PAC:18097355 Citrus sinensis 136  
orange1.1g032383m A0A067EN30 PAC:18109941 Citrus sinensis 142  
AT5G02960.1 P49201 PAC:19665822 Arabidopsis thaliana 142  
ATCG00065.1 PAC:19638004 Arabidopsis thaliana 123  
ATMG00980.1 PAC:19643692 Arabidopsis thaliana 125  
ATCG00905.1 PAC:19638011 Arabidopsis thaliana 123  
ATCG01230.1 PAC:19638014 Arabidopsis thaliana 123  
AT3G09680.1 Q9SF35 PAC:19658413 Arabidopsis thaliana 142  
AT2G07675.1 PAC:19642284 Arabidopsis thaliana 125  
Thhalv10017715m V4LKX4 PAC:20180320 Eutrema salsugineum 102  
Thhalv10021720m PAC:20183342 Eutrema salsugineum 142  
Thhalv10014965m PAC:20204926 Eutrema salsugineum 142  
Thhalv10029182m V4LFT3 PAC:20196955 Eutrema salsugineum 102  
Thhalv10019491m V4KLX6 PAC:20192672 Eutrema salsugineum 136  
Ciclev10003318m V4V1F1 PAC:20788457 Citrus clementina 87  

3 Publications

First Author Title Year Journal Volume Pages PubMed ID
            11297922
            11290319
            11114498