Protein Domain : IPR000439

Type:  Family Name:  Ribosomal protein L15e
Description:  Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ].A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities []. One of these families consists of:Mammalian L15.Insect L15.Plant L15.Yeast YL10 (L13) (Rp15r).Archaebacterial L15e.These proteins have about 200 amino acid residues. Short Name:  Ribosomal_L15e

1 Child Features

DB identifier Type Name
IPR020926 Family Ribosomal protein L15e, archaeal

2 Contains

DB identifier Type Name
IPR012678 Domain Ribosomal protein L23/L15e core domain
IPR020925 Conserved_site Ribosomal protein L15e, conserved site

2 Cross Referencess

Identifier
PTHR11847
PF00827

0 Found In

3 GO Annotations

GO Term Gene Name
GO:0003735 IPR000439
GO:0006412 IPR000439
GO:0005840 IPR000439

3 Ontology Annotations

GO Term Gene Name
GO:0003735 IPR000439
GO:0006412 IPR000439
GO:0005840 IPR000439

0 Parent Features

931 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
270259 D8QTX2 PAC:15418813 Selaginella moellendorffii 204  
evm.model.supercontig_13.286 PAC:16407809 Carica papaya 204  
evm.model.supercontig_13.287 PAC:16407810 Carica papaya 153  
30101.m000382 B9SXE2 PAC:16817782 Ricinus communis 204  
30147.m014247 B9R9V2 PAC:16820258 Ricinus communis 204  
Cucsa.094240.4 PAC:16957717 Cucumis sativus 186  
Cucsa.094240.1 PAC:16957714 Cucumis sativus 204  
Cucsa.094240.2 PAC:16957715 Cucumis sativus 204  
Cucsa.094240.3 PAC:16957716 Cucumis sativus 186  
Cucsa.114420.2 PAC:16960407 Cucumis sativus 155  
Cucsa.114420.1 PAC:16960406 Cucumis sativus 204  
Cucsa.301700.1 A0A0A0KKP5 PAC:16975644 Cucumis sativus 204  
Cucsa.301700.2 PAC:16975645 Cucumis sativus 158  
orange1.1g028730m A0A067FDV6 PAC:18094448 Citrus sinensis 204  
orange1.1g031760m A0A067FD62 PAC:18094449 Citrus sinensis 153  
orange1.1g029857m A0A067E3Z5 PAC:18108906 Citrus sinensis 186  
orange1.1g029295m A0A067EFE0 PAC:18108905 Citrus sinensis 195  
orange1.1g028757m A0A067E4C6 PAC:18108904 Citrus sinensis 204  
AT4G16720.1 O23515 PAC:19644049 Arabidopsis thaliana 204  
AT4G17390.1 Q8VYF1 PAC:19646009 Arabidopsis thaliana 204  
Thhalv10026269m PAC:20192821 Eutrema salsugineum 204  
Thhalv10019144m PAC:20191106 Eutrema salsugineum 204  
Ciclev10002413m V4SVE5 PAC:20787663 Citrus clementina 220  
Ciclev10024403m V4T057 PAC:20806961 Citrus clementina 230  
Ciclev10005611m V4S7Q8 PAC:20791311 Citrus clementina 273  
Lus10009653 PAC:23140024 Linum usitatissimum 205  
Lus10004743 PAC:23162932 Linum usitatissimum 204  
Lus10007805 PAC:23143614 Linum usitatissimum 204  
Lus10028965 PAC:23177315 Linum usitatissimum 241  
Lus10009017 PAC:23173358 Linum usitatissimum 205  

4 Publications

First Author Title Year Journal Volume Pages PubMed ID
            11297922
            11290319
            11114498
            7733938