Protein Domain : IPR006896

Type:  Domain Name:  Sec23/Sec24, trunk domain
Description:  COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (), an alpha/beta trunk domain, an all-helical region (), and a C-terminal gelsolin-like domain (). This entry describes the Sec23/24 alpha/beta trunk domain, which is formed from a single, approximately 250-residue segment plugged into the beta-barrel between strands beta-1 and beta-19. The trunk has an alpha/beta fold with a vWA topology, and it forms the dimer interface, primarily involving strand beta-14 on Sec23 and Sec24; in addition, the trunk domain of Sec23 contacts Sar1. Short Name:  Sec23/24_trunk_dom

0 Child Features

0 Contains

1 Cross References

Identifier
PF04811

0 Found In

3 GO Annotations

GO Term Gene Name
GO:0006886 IPR006896
GO:0006888 IPR006896
GO:0030127 IPR006896

3 Ontology Annotations

GO Term Gene Name
GO:0006886 IPR006896
GO:0006888 IPR006896
GO:0030127 IPR006896

0 Parent Features

3256 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
107900 D8S3I7 PAC:15402145 Selaginella moellendorffii 763  
168140 D8R5T0 PAC:15419910 Selaginella moellendorffii 756  
157789 D8SRY9 PAC:15414599 Selaginella moellendorffii 898  
440407 D8RBJ6 PAC:15404755 Selaginella moellendorffii 733  
89582 D8RB14 PAC:15410266 Selaginella moellendorffii 704  
140536 D8QRN3 PAC:15407376 Selaginella moellendorffii 979  
evm.model.supercontig_146.1 PAC:16409096 Carica papaya 404  
evm.model.supercontig_157.12 PAC:16409797 Carica papaya 775  
evm.model.supercontig_25.38 PAC:16414831 Carica papaya 989  
evm.model.supercontig_264.15 PAC:16415414 Carica papaya 692  
evm.model.supercontig_32.21 PAC:16417398 Carica papaya 325  
evm.model.supercontig_375.2 PAC:16418815 Carica papaya 682  
evm.model.supercontig_418.3 PAC:16419670 Carica papaya 499  
evm.model.supercontig_418.1 PAC:16419668 Carica papaya 111  
evm.model.supercontig_57.13 PAC:16422832 Carica papaya 593  
29709.m001233 B9SKJ9 PAC:16806449 Ricinus communis 761  
29844.m003173 B9RTF3 PAC:16810881 Ricinus communis 782  
29908.m006131 B9RJ34 PAC:16812949 Ricinus communis 1056  
30055.m001571 B9SCU8 PAC:16816202 Ricinus communis 740  
30076.m004553 B9RN42 PAC:16817165 Ricinus communis 834  
30128.m008634 B9RET0 PAC:16818224 Ricinus communis 1094  
30183.m001308 B9RRN0 PAC:16822993 Ricinus communis 782  
29337.m000224 B9T474 PAC:16802733 Ricinus communis 1031  
Cucsa.319870.1 PAC:16977302 Cucumis sativus 644  
Cucsa.362480.1 PAC:16980930 Cucumis sativus 690  
Cucsa.383190.1 A0A0A0LKI8 PAC:16982337 Cucumis sativus 1105  
Cucsa.386630.1 A0A0A0LLL6 PAC:16982712 Cucumis sativus 783  
Cucsa.050860.2 A0A0A0LW45 PAC:16954144 Cucumis sativus 1031  
Cucsa.050860.4 PAC:16954146 Cucumis sativus 966  
Cucsa.050860.5 PAC:16954147 Cucumis sativus 915  

2 Publications

First Author Title Year Journal Volume Pages PubMed ID
            11535824
            12239560