Protein Domain : IPR029060

Type:  Domain Name:  PIN domain-like
Description:  This entry represents a domain sharing protein structural similarity with the PIN domain. This domain can also be found in the N-terminal of the 5'3'-exonuclease, which has a 3-layer alpha/beta/alpha core structure and contains an alpha-helical arch [].PIN domains are small protein domains identified by the presence of three strictly conserved acidic residues. Apart from these three residues, there is poor sequence conservation []. PIN domains are found in eukaryotes, eubacteria and archaea. In eukaryotes they are ribonucleases involved in nonsense mediated mRNA decay [] and in processing of 18S ribosomal RNA []. In prokaryotes, they are the toxic components of toxin-antitoxin (TA) systems, their toxicity arising by virtue of their ribonuclease activity. The PIN domain TA systems are now called VapBC TAs(virulence associated proteins), where VapB is the inhibitor and VapC, the PIN-domain ribonuclease toxin []. Short Name:  PIN_domain-like

3 Child Features

DB identifier Type Name
IPR021139 Domain NYN domain, limkain-b1-type
IPR002716 Domain PIN domain
IPR020046 Domain 5'-3' exonuclease, alpha-helical arch, N-terminal

0 Contains

2 Cross Referencess

Identifier
G3DSA:3.40.50.1010
SSF88723

0 Found In

0 GO Annotation

0 Ontology Annotations

0 Parent Features

3256 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
57723 D8RTA4 PAC:15406438 Selaginella moellendorffii 152  
105035 D8RZ80 PAC:15411871 Selaginella moellendorffii 277  
175620 D8RZD7 PAC:15422004 Selaginella moellendorffii 401  
416415 D8RZ77 PAC:15423036 Selaginella moellendorffii 300  
417477 D8S2C5 PAC:15403768 Selaginella moellendorffii 270  
56696 D8S6I2 PAC:15402894 Selaginella moellendorffii 260  
111465 D8S952 PAC:15410492 Selaginella moellendorffii 377  
419584 D8S9E7 PAC:15410583 Selaginella moellendorffii 718  
113855 D8SCQ6 PAC:15419337 Selaginella moellendorffii 127  
54861 D8SHJ8 PAC:15420886 Selaginella moellendorffii 363  
156135 D8SKF4 PAC:15406786 Selaginella moellendorffii 939  
407022 D8R3N2 PAC:15415891 Selaginella moellendorffii 625  
85061 D8R3Y1 PAC:15416989 Selaginella moellendorffii 552  
46232 D8SN35 PAC:15414957 Selaginella moellendorffii 273  
85223 D8R642 PAC:15418413 Selaginella moellendorffii 232  
424808 D8SR31 PAC:15405160 Selaginella moellendorffii 472  
424811 D8SR34 PAC:15405177 Selaginella moellendorffii 443  
46231 D8SR51 PAC:15414956 Selaginella moellendorffii 273  
425059 D8SRW5 PAC:15402137 Selaginella moellendorffii 334  
73710 D8QQY4 PAC:15409158 Selaginella moellendorffii 116  
408947 D8R8Z5 PAC:15403310 Selaginella moellendorffii 217  
91292 D8RE63 PAC:15414170 Selaginella moellendorffii 217  
410274 D8RE83 PAC:15404112 Selaginella moellendorffii 454  
evm.TU.contig_33779.1 PAC:16430332 Carica papaya 515  
evm.TU.contig_34050.2 PAC:16430381 Carica papaya 244  
evm.TU.contig_40176.1 PAC:16431448 Carica papaya 232  
evm.model.supercontig_1059.1 PAC:16405144 Carica papaya 231  
evm.model.supercontig_107.42 PAC:16405346 Carica papaya 564  
evm.model.supercontig_114.1 PAC:16406098 Carica papaya 94  
evm.model.supercontig_140.35 PAC:16408880 Carica papaya 333  

4 Publications

First Author Title Year Journal Volume Pages PubMed ID
            17053788
            21036780
            19706509
            8657312