Protein Domain : IPR015300

Type:  Domain Name:  DNA-binding pseudobarrel domain
Description:  This entry represents a DNA recocognition domain found in the restriction endonuclease EcoRII and numerous transcription factors. The EcoRII structure has been studied and forms an eight-stranded beta-sheet with the strands in the order of b2, b5, b4, b3, b7, b6, b1 and b8. They are mostly antiparallel to each other except that b3 is parallel to b7. Alternatively, it may also be viewed as consisting of two mini beta-sheets of four antiparallel beta-strands, sheet I from beta-strands b2, b5, b4, b3 and sheet II from strands b7, b6, b1, b8, folded into an open mixed beta-barrel with a novel topology. Sheet I has a simple Greek key motif while sheet II does not []. Short Name:  DNA-bd_pseudobarrel

2 Child Features

DB identifier Type Name
IPR003340 Domain B3 DNA binding domain
IPR023372 Domain Restriction endonuclease, type II, EcoRII, N-terminal

0 Contains

2 Cross Referencess

Identifier
G3DSA:2.40.330.10
SSF101936

0 Found In

0 GO Annotation

0 Ontology Annotations

0 Parent Features

40233 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
411671 D8RIN6 PAC:15410251 Selaginella moellendorffii 345  
412483 D8RLM1 PAC:15411660 Selaginella moellendorffii 381  
412738 D8RLB4 PAC:15413936 Selaginella moellendorffii 703  
413150 D8RNI2 PAC:15412197 Selaginella moellendorffii 378  
413242 D8RNT6 PAC:15412950 Selaginella moellendorffii 434  
441966 D8RP80 PAC:15411797 Selaginella moellendorffii 519  
39364 PAC:15417290 Selaginella moellendorffii 88  
59628 D8RQU1 PAC:15411614 Selaginella moellendorffii 127  
59621 D8RQU3 PAC:15411608 Selaginella moellendorffii 116  
405321 D8QWZ3 PAC:15412319 Selaginella moellendorffii 538  
51695 PAC:15410707 Selaginella moellendorffii 665  
417025 D8S148 PAC:15422923 Selaginella moellendorffii 409  
417284 D8S2Q4 PAC:15402341 Selaginella moellendorffii 358  
417628 D8S324 PAC:15405254 Selaginella moellendorffii 166  
110104 D8S6Z7 PAC:15405006 Selaginella moellendorffii 261  
418769 D8S6C1 PAC:15409078 Selaginella moellendorffii 212  
81992 PAC:15412241 Selaginella moellendorffii 381  
419614 D8S9H8 PAC:15411208 Selaginella moellendorffii 295  
39404 PAC:15417910 Selaginella moellendorffii 89  
117217 PAC:15403898 Selaginella moellendorffii 401  
69265 D8R334 PAC:15415836 Selaginella moellendorffii 105  
445871 D8SLZ0 PAC:15422660 Selaginella moellendorffii 283  
424114 PAC:15422082 Selaginella moellendorffii 431  
181406 PAC:15416095 Selaginella moellendorffii 907  
424732 D8SQV9 PAC:15404410 Selaginella moellendorffii 192  
39429 PAC:15417965 Selaginella moellendorffii 83  
85261 PAC:15418492 Selaginella moellendorffii 80  
425183 D8SS98 PAC:15402913 Selaginella moellendorffii 283  
430108 D8T8C7 PAC:15417719 Selaginella moellendorffii 552  
403971 D8QT57 PAC:15411219 Selaginella moellendorffii 237  

1 Publications

First Author Title Year Journal Volume Pages PubMed ID
            14659759