Protein Domain : IPR013123

Type:  Domain Name:  RNA 2-O ribose methyltransferase, substrate binding
Description:  Most cellular RNAs undergo a number of post-transcriptional nucleoside modifications. While the biological role of many of these modifications is unknown, some have been shown to be necessary for cell growth or for resistance to antibiotics [, ]. One of the most common modifications is 2'O-ribose methylation catalysed by the RNA 2'O-ribose methyltransferases, a large enzyme family that transfer a methyl group from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of the backbone ribose [].This entry represents a substrate-binding domain found in a variety of bacterial and mitochondrial RNA 2'-O ribose methyltransferases. These include the bacterial enzyme RlmB, which specifically methylates the conserved nucleotide guanosine 2251 in 23S RNA, and PET56, which specifically methylates the equivalent guanosine in mitochondrial 21S RNA [, ]. This domain forms a four-stranded mixed beta sheet similar to that found in other RNA binding enzymes []. It shows considerable conformational flexibility which is thought to be important for its ability to bind RNA. Short Name:  SpoU_subst-bd

0 Child Features

0 Contains

2 Cross Referencess

Identifier
PF08032
SM00967

2 Found Ins

DB identifier Type Name
IPR004441 Family RNA methyltransferase TrmH family
IPR016479 Family tRNA/rRNA methyltransferase, YfiF, predicted

1 GO Annotation

GO Term Gene Name
GO:0008168 IPR013123

1 Ontology Annotations

GO Term Gene Name
GO:0008168 IPR013123

1 Parent Features

DB identifier Type Name
IPR029064 Domain 50S ribosomal protein L30e-like

346 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
3012 D8QPV3 PAC:15409740 Selaginella moellendorffii 244  
evm.model.supercontig_40.94 PAC:16419501 Carica papaya 394  
29912.m005432 B9RKH2 PAC:16813309 Ricinus communis 517  
Cucsa.288820.1 PAC:16975132 Cucumis sativus 512  
orange1.1g007847m A0A067FKB1 PAC:18116510 Citrus sinensis 587  
orange1.1g007846m A0A067FKB1 PAC:18116511 Citrus sinensis 587  
AT2G19870.1 Q8W497 PAC:19638391 Arabidopsis thaliana 589  
Thhalv10002296m V4M5T3 PAC:20200803 Eutrema salsugineum 604  
Ciclev10007825m V4UQ01 PAC:20795719 Citrus clementina 587  
Ciclev10007826m V4UQ01 PAC:20795718 Citrus clementina 587  
Lus10011129 PAC:23167578 Linum usitatissimum 535  
Lus10043030 PAC:23168288 Linum usitatissimum 535  
Potri.018G087800.1 PAC:27011035 Populus trichocarpa 574  
Potri.018G087800.2 A0A2K1WY43 PAC:27011036 Populus trichocarpa 541  
Gorai.001G010100.1 A0A0D2PIW6 PAC:26821689 Gossypium raimondii 559  
36342 I0Z0T0 PAC:27391151 Coccomyxa subellipsoidea C-169 290  
187922 C1MYL6 PAC:27338676 Micromonas pusilla CCMP1545 463  
62715 C1EER3 PAC:27404884 Micromonas sp RCC299 513  
27615 A4S7U0 PAC:27419651 Ostreococcus lucimarinus 318  
Thecc1EG037786t1 A0A061GMB9 PAC:27430565 Theobroma cacao 590  
Migut.K00541.3.p A0A022QSZ3 PAC:28936899 Mimulus guttatus 512  
Migut.K00541.1.p A0A022QSZ3 PAC:28936900 Mimulus guttatus 512  
Migut.K00541.2.p A0A022QSZ3 PAC:28936898 Mimulus guttatus 512  
Araha.44831s0001.1.p PAC:28843136 Arabidopsis halleri 588  
Cagra.3763s0001.1.p PAC:28896212 Capsella grandiflora 444  
Glyma.08G033500.1.p I1KPW8 PAC:30538540 Glycine max 557  
Brara.G00092.1.p A0A397YNQ0 PAC:30634796 Brassica rapa FPsc 555  
Bostr.18351s0442.1.p PAC:30676402 Boechera stricta 588  
Cre13.g566150.t1.2 A0A2K3CZB4 PAC:30784474 Chlamydomonas reinhardtii 599  
Medtr8g102480.1 G7L7F2 PAC:31072013 Medicago truncatula 572  

5 Publications

First Author Title Year Journal Volume Pages PubMed ID
            8266080
            9187657
            12377117
            9917067
            11698387