Protein Domain : IPR021138

Type:  Family Name:  60S ribosomal protein L18a/ L20, eukaryotes
Description:  Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ].This entry represents the eukaryotic 60S ribosomal protein L18a [] and L20 [] from eukaryotes. Rat ribosomal protein L18 is homologous to Xenopus laevisL14 []. Short Name:  Ribosomal_L18a/L20_eukaryotes

0 Child Features

0 Contains

1 Cross References

Identifier
PIRSF002190

0 Found In

3 GO Annotations

GO Term Gene Name
GO:0003735 IPR021138
GO:0006412 IPR021138
GO:0005840 IPR021138

3 Ontology Annotations

GO Term Gene Name
GO:0003735 IPR021138
GO:0006412 IPR021138
GO:0005840 IPR021138

1 Parent Features

DB identifier Type Name
IPR028877 Family 50S ribosomal protein L18Ae/60S ribosomal protein L20 and L18a

3256 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
227198 D8QN40 PAC:15402545 Selaginella moellendorffii 177  
evm.model.supercontig_166.21 PAC:16410424 Carica papaya 178  
evm.model.supercontig_19.3 PAC:16412038 Carica papaya 178  
29989.m000434 B9SR77 PAC:16815211 Ricinus communis 178  
Cucsa.047660.1 A0A0A0KIJ4 PAC:16953715 Cucumis sativus 178  
Cucsa.058840.1 PAC:16954732 Cucumis sativus 178  
Cucsa.212370.1 PAC:16969329 Cucumis sativus 178  
orange1.1g035537m A0A067GHK8 PAC:18112633 Citrus sinensis 178  
orange1.1g028910m A0A067E2Q9 PAC:18110630 Citrus sinensis 202  
orange1.1g030276m A0A067E9K7 PAC:18104843 Citrus sinensis 180  
AT3G14600.1 Q9LUD4 PAC:19659915 Arabidopsis thaliana 178  
AT1G29965.1 Q8L7K0 PAC:19649762 Arabidopsis thaliana 178  
AT2G34480.1 P51418 PAC:19642597 Arabidopsis thaliana 178  
Thhalv10017304m V4MAC6 PAC:20180469 Eutrema salsugineum 178  
Thhalv10021546m V4NPR7 PAC:20182569 Eutrema salsugineum 203  
Thhalv10021624m V4LDL4 PAC:20182570 Eutrema salsugineum 178  
Ciclev10016900m V4W9F6 PAC:20817483 Citrus clementina 178  
Ciclev10032878m V4TAT1 PAC:20805063 Citrus clementina 180  
Lus10023454 PAC:23160526 Linum usitatissimum 178  
Lus10023457 PAC:23160464 Linum usitatissimum 178  
Lus10019881 PAC:23164063 Linum usitatissimum 178  
Potri.T158800.1 U7E0G3 PAC:27003387 Populus trichocarpa 152  
Potri.002G057600.3 A9P8B1 PAC:27023138 Populus trichocarpa 178  
Potri.002G057600.1 A9P8B1 PAC:27023139 Populus trichocarpa 178  
Potri.002G057600.2 PAC:27023140 Populus trichocarpa 178  
Potri.002G057600.4 A9P8B1 PAC:27023141 Populus trichocarpa 178  
Potri.004G063300.2 A9PA10 PAC:26990969 Populus trichocarpa 178  
Potri.004G063300.4 PAC:26990968 Populus trichocarpa 207  
Potri.004G063300.1 PAC:26990967 Populus trichocarpa 209  
Potri.011G072400.1 A9PBF7 PAC:27003017 Populus trichocarpa 178  

6 Publications

First Author Title Year Journal Volume Pages PubMed ID
            11297922
            11290319
            11114498
            1840484
            3371159
            9559554