Protein Domain : IPR002672

Type:  Family Name:  Ribosomal protein L28e
Description:  Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ].Ribosomal protein L28e forms part of the 60S ribosomal subunit []. This family is found in eukaryotes. In rat there are 9 or 10 copies of the L28 gene. The L28 protein contains a possible internal duplication of 9 residues []. Short Name:  Ribosomal_L28e

0 Child Features

0 Contains

1 Cross References

Identifier
PTHR10544

0 Found In

4 GO Annotations

GO Term Gene Name
GO:0003735 IPR002672
GO:0006412 IPR002672
GO:0005622 IPR002672
GO:0005840 IPR002672

4 Ontology Annotations

GO Term Gene Name
GO:0003735 IPR002672
GO:0006412 IPR002672
GO:0005622 IPR002672
GO:0005840 IPR002672

0 Parent Features

949 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
164298 D8QNB0 PAC:15409090 Selaginella moellendorffii 138  
evm.model.supercontig_131.27 PAC:16408020 Carica papaya 173  
evm.model.supercontig_32.99 PAC:16417483 Carica papaya 150  
29912.m005411 B9RKC5 PAC:16813288 Ricinus communis 144  
30146.m003428 B9RQ66 PAC:16819550 Ricinus communis 144  
Cucsa.341320.1 A0A0A0LIG3 PAC:16979208 Cucumis sativus 148  
Cucsa.116910.1 PAC:16960643 Cucumis sativus 149  
orange1.1g040088m A0A067F672 PAC:18103661 Citrus sinensis 131  
orange1.1g031915m A0A067EL75 PAC:18104945 Citrus sinensis 150  
orange1.1g031911m A0A067EL75 PAC:18104943 Citrus sinensis 150  
orange1.1g031967m A0A067EL75 PAC:18104944 Citrus sinensis 150  
AT4G29410.2 Q9M0E2 PAC:19647283 Arabidopsis thaliana 143  
AT4G29410.1 Q9M0E2 PAC:19647282 Arabidopsis thaliana 143  
AT2G19730.1 O82204 PAC:19640879 Arabidopsis thaliana 143  
AT2G19730.2 O82204 PAC:19640880 Arabidopsis thaliana 143  
AT2G19730.3 O82204 PAC:19640881 Arabidopsis thaliana 143  
Thhalv10026507m V4P4A1 PAC:20195161 Eutrema salsugineum 143  
Thhalv10026509m V4P4A1 PAC:20195162 Eutrema salsugineum 143  
Thhalv10002093m V4M5S2 PAC:20200673 Eutrema salsugineum 223  
Ciclev10027521m V4UK37 PAC:20800062 Citrus clementina 108  
Ciclev10009795m V4TVN3 PAC:20796124 Citrus clementina 150  
Ciclev10009797m V4TVN3 PAC:20796125 Citrus clementina 150  
Ciclev10009798m V4TVN3 PAC:20796123 Citrus clementina 150  
Lus10006869 PAC:23144388 Linum usitatissimum 150  
Lus10037609 PAC:23167346 Linum usitatissimum 150  
Lus10012914 PAC:23158529 Linum usitatissimum 145  
Lus10012915 PAC:23158546 Linum usitatissimum 145  
Lus10032699 PAC:23158955 Linum usitatissimum 145  
Potri.T165500.1 PAC:27027266 Populus trichocarpa 147  
Potri.001G194000.1 A9P9G9 PAC:27042323 Populus trichocarpa 146  

5 Publications

First Author Title Year Journal Volume Pages PubMed ID
            11297922
            11290319
            11114498
            1840484
            2207170